sim_find_mgr_from_cov: This function computes the missing genotype rate given the...
In mccoy-lab/rhapsodi: R haploid sperm/oocyte data imputation
View source: R/sim_find_mgr_from_cov.R
sim_find_mgr_from_cov R Documentation
This function computes the missing genotype rate given the coverage
Description
This function computes the missing genotype rate of the simulation given the desired coverage
by using the poisson density function parameterized by x = 0 and lambda equal to the coverage metric
to return the probability of the density function, or the missing genotype rate
Note that the function checks to assure that the coverage is greater than 0
Usage
sim_find_mgr_from_cov(coverage)
Arguments
coverage
a numeric, must be greater than 0. The desired coverage of sequencing (e.g. 0.01x, 0.1x, 1.204x, etc)
Value
missing_genotype_rate a numeric, the corresponding missing genotype rate for the given coverage, < 1
mccoy-lab/rhapsodi documentation built on July 27, 2022, 3:56 a.m.
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View source: R/sim_find_mgr_from_cov.R
| sim_find_mgr_from_cov | R Documentation |
This function computes the missing genotype rate given the coverage
Description
This function computes the missing genotype rate of the simulation given the desired coverage by using the poisson density function parameterized by x = 0 and lambda equal to the coverage metric to return the probability of the density function, or the missing genotype rate Note that the function checks to assure that the coverage is greater than 0
Usage
sim_find_mgr_from_cov(coverage)
Arguments
coverage |
a numeric, must be greater than 0. The desired coverage of sequencing (e.g. 0.01x, 0.1x, 1.204x, etc) |
Value
missing_genotype_rate a numeric, the corresponding missing genotype rate for the given coverage, < 1
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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