sim_generate_donor_hap: This function generates the diploid donor haplotypes of...
In mccoy-lab/rhapsodi: R haploid sperm/oocyte data imputation
View source: R/sim_generate_donor_hap.R
sim_generate_donor_hap R Documentation
This function generates the diploid donor haplotypes of length num_snps with only heterozygous sites
Description
This function generates the diploid donor haplotypes by first generating a single haplotype
using a uniform distribution to pick the reference (a 0) or the alternate (a 1) allele
for each position for num_snps positions.
Then for the second donor haplotype we assume that each of these SNP positions are heterozygous
and just invert the bits of the first haplotypes to make this so.
Usage
sim_generate_donor_hap(num_snps)
Arguments
num_snps
an integer, the number of SNP positions for which we want to generate data
Value
donor_haps a data frame with the truth phased diploid donor haplotypes with two columns donor1 and donor2
mccoy-lab/rhapsodi documentation built on July 27, 2022, 3:56 a.m.
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View source: R/sim_generate_donor_hap.R
| sim_generate_donor_hap | R Documentation |
This function generates the diploid donor haplotypes of length num_snps with only heterozygous sites
Description
This function generates the diploid donor haplotypes by first generating a single haplotype
using a uniform distribution to pick the reference (a 0) or the alternate (a 1) allele
for each position for num_snps positions.
Then for the second donor haplotype we assume that each of these SNP positions are heterozygous
and just invert the bits of the first haplotypes to make this so.
Usage
sim_generate_donor_hap(num_snps)
Arguments
num_snps |
an integer, the number of SNP positions for which we want to generate data |
Value
donor_haps a data frame with the truth phased diploid donor haplotypes with two columns donor1 and donor2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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