sim01NA42: Simulated Sperm-seq data 0/1/NA encoded

In mccoy-lab/rhapsodi: R haploid sperm/oocyte data imputation

Simulated Sperm-seq data 0/1/NA encoded

Description

Simulated Sperm-seq data from the generative model, with data 0/1/NA encoded, with 50 gametes, 5000 beginning SNPs, 0.1 coverage, average recombination rate of 1, sequencing error rate of 0.005. Following filtering, there are 4136 hetSNPs. This data originated from the generative model with a random seed of 42. The first column is the SNP index positions and the following 50 columns are the gamete genotypes which are encoded with 0/1/NA.

Usage

sim01NA42

Format

A dataframe with column names, 4136 rows, and 51 columns:

positions

positions, integer, SNP index pre-filtering for hetSNPs only

gami_

gami_, 0, 1, or NA, the genotype at that SNP for gamete i

mccoy-lab/rhapsodi documentation built on July 27, 2022, 3:56 a.m.