API for mccoy-lab/rhapsodi
R haploid sperm/oocyte data imputation
| Global functions | |
|---|---|
| betaregmodel_20220718 | Man page |
| build_hmm | Man page Source code |
| calculate_window_size | Man page Source code |
| cbind_pos | Man page Source code |
| dataACGT | Man page |
| discover_meiotic_recombination | Man page Source code |
| export_data | Man page Source code |
| fill_na | Man page Source code |
| find_recomb_spots | Man page Source code |
| get_mode | Man page Source code |
| impute_gamete_genotypes | Man page Source code |
| invert_bits | Man page Source code |
| phase_donor_haplotypes | Man page Source code |
| re_recode_gametes | Man page Source code |
| read_data | Man page Source code |
| recode_gametes | Man page Source code |
| reconstruct_hap | Man page Source code |
| record_ref_alt | Man page Source code |
| rhapsodi_autorun | Man page Source code |
| run_hmm | Man page Source code |
| sim01NA42 | Man page |
| sim_add_de_novo_mut | Man page Source code |
| sim_add_na_flatten | Man page Source code |
| sim_add_seq_error | Man page Source code |
| sim_add_to_na_flatten | Man page Source code |
| sim_assess_gam_imputation | Man page Source code |
| sim_assess_it | Man page Source code |
| sim_assess_phasing | Man page Source code |
| sim_assess_recomb | Man page Source code |
| sim_autorun | Man page Source code |
| sim_completeness | Man page Source code |
| sim_filter_generated_data | Man page Source code |
| sim_find_cov_from_mgr | Man page Source code |
| sim_find_fn | Man page Source code |
| sim_find_fp | Man page Source code |
| sim_find_mgr_from_cov | Man page Source code |
| sim_find_num_crossovers | Man page Source code |
| sim_find_num_nas | Man page Source code |
| sim_find_tn | Man page Source code |
| sim_find_tp | Man page Source code |
| sim_gamete_killing | Man page Source code |
| sim_gene_conversion | Man page Source code |
| sim_generate_donor_hap | Man page Source code |
| sim_generate_gam | Man page Source code |
| sim_generate_global | Man page Source code |
| sim_hamming_distance_ignoreNA | Man page Source code |
| sim_lhs | Man page Source code |
| sim_metrics | Man page Source code |
| sim_run_generative_model | Man page Source code |
| sim_run_generative_model_with_TD | Man page Source code |
| sim_ser | Man page Source code |
| split_with_overlap | Man page Source code |
| stitch_haplotypes | Man page Source code |
| unsmooth | Man page Source code |
