split_with_overlap: A function to separate the gamete SNP positions into...
In mccoy-lab/rhapsodi: R haploid sperm/oocyte data imputation
View source: R/split_with_overlap.R
split_with_overlap R Documentation
A function to separate the gamete SNP positions into overlapping segments
Description
This function separates each gamete into overlapping windows of size determined by the user. These
overlaps are an input to the distance matrix constructed in reconstruct_haplotypes.
Usage
split_with_overlap(vector_of_positions, window_size, overlap_denom)
Arguments
vector_of_positions
vector of SNP positions
window_size
User-input value for length of segment
overlap_denom
User-input value for denominator in calculation of overlap, or the degree of overlap between segments
Details
Adapated from https://stackoverflow.com/questions/8872376/split-vector-with-overlapping-samples-in-r
Value
windows list of lists with the number of lists equal to the number of windows and each inner list containing the SNP positions in that overlapping segment
mccoy-lab/rhapsodi documentation built on July 27, 2022, 3:56 a.m.
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View source: R/split_with_overlap.R
| split_with_overlap | R Documentation |
A function to separate the gamete SNP positions into overlapping segments
Description
This function separates each gamete into overlapping windows of size determined by the user. These
overlaps are an input to the distance matrix constructed in reconstruct_haplotypes.
Usage
split_with_overlap(vector_of_positions, window_size, overlap_denom)
Arguments
vector_of_positions |
vector of SNP positions |
window_size |
User-input value for length of segment |
overlap_denom |
User-input value for denominator in calculation of overlap, or the degree of overlap between segments |
Details
Adapated from https://stackoverflow.com/questions/8872376/split-vector-with-overlapping-samples-in-r
Value
windows list of lists with the number of lists equal to the number of windows and each inner list containing the SNP positions in that overlapping segment
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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