unsmooth: A function to unsmooth or replace original reads for the...
In mccoy-lab/rhapsodi: R haploid sperm/oocyte data imputation
unsmooth R Documentation
A function to unsmooth or replace original reads for the gametes
Description
This function finds where the resulting haplotype assignments differ from the original reads and replaces the imputed data with
the originally observed data, hence unsmoothing the HMM signal.
Usage
unsmooth(original_gamete_df, filled_gamete_data)
Arguments
original_gamete_df
original gamete data with haplotype by position
filled_gamete_data
filled gamete data from fill_gametes
Value
filled_gamete_data filled gamete data in tibble form with replaced original reads
mccoy-lab/rhapsodi documentation built on July 27, 2022, 3:56 a.m.
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| unsmooth | R Documentation |
A function to unsmooth or replace original reads for the gametes
Description
This function finds where the resulting haplotype assignments differ from the original reads and replaces the imputed data with the originally observed data, hence unsmoothing the HMM signal.
Usage
unsmooth(original_gamete_df, filled_gamete_data)
Arguments
original_gamete_df |
original gamete data with haplotype by position |
filled_gamete_data |
filled gamete data from |
Value
filled_gamete_data filled gamete data in tibble form with replaced original reads
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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