mcneilco/racas
R Package for ACAS

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Source code
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Man pages
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mcneilco/racas: R Package for ACAS
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API

API for mcneilco/racas
R Package for ACAS

Global functions
.onLoad Source code
Messenger Man page
ModelFit Man page
ModelFit-class Man page
acasEntityHierarchy Man page
acasEntityHierarchyCamel Man page
acasEntityHierarchySpace Man page
addContainerLocationHistory Source code
addError Man page Source code
addFileLink Man page Source code
add_clob_values_to_fit_data Source code
analysisOverTime Source code
analysis_group_save_from_tsv Man page Source code
api_createProtocol Man page Source code
api_doseResponse_experiment Man page Source code
api_doseResponse_fitData_to_curveDetail Man page Source code
api_doseResponse_get_curve_detail Source code
api_doseResponse_get_curve_stubs Source code
api_doseResponse_refit Source code
api_doseResponse_save_session Source code
api_doseResponse_update_flag Source code
api_get_curve_curator_url Source code
appendCodeNames Man page Source code
appendToContainerName Man page Source code
applicationSettings Man page
applyParsedParametersToFitData Source code
apply_inactive_rules Source code
apply_limits.LL4 Source code
apply_limits.LL4IC50 Source code
apply_limits.MM2 Source code
apply_limits.ki Source code
apply_limits.substrateInhibition Source code
apply_parameter_rules_goodness_of_fits Source code
apply_parameter_rules_limits Source code
biphasic_detection Source code
capture_output Source code
categorize.LL4 Source code
categorize.LL4IC50 Source code
categorize.MM2 Source code
categorize.ki Source code
categorize.substrateInhibition Source code
changeEntityMode Man page Source code
checkExistence Man page Source code
checkMemoryLimitAndKillSelf Source code
checkValueKinds Man page Source code
chunkMillionIds Man page Source code
cleanEnvironment Source code
cleanObjects Source code
cleanPackages Source code
closeAllDatabaseConnections Source code
coalesce Source code
combine.lists Source code
compactList Source code
convertSELExperimentMetaDataToSEL Man page Source code
createAnalysisGroup Source code
createAnalysisGroupLabel Source code
createAnalysisGroupState Source code
createCodeTablesFromJsonArray Man page Source code
createContainer Source code
createContainerContainerInteraction Source code
createContainerContainerInteractionState Source code
createContainerLabel Source code
createContainerState Source code
createExperiment Source code
createExperimentLabel Source code
createExperimentState Source code
createHtmlSummary Man page Source code
createInteraction Source code
createInteractionKind Source code
createLabelKind Source code
createLabelSequence Source code
createLogger Man page Source code
createLsState Source code
createLsTransaction Source code
createLsTransactions Source code
createNamedExperiment Man page Source code
createNewACASExperiment Source code
createProtocol Source code
createProtocolLabel Source code
createProtocolState Source code
createSELCalculatedResults Man page Source code
createSELExperimentMetaData Man page Source code
createSELFile Man page Source code
createSELRawResults Man page Source code
createStateKind Source code
createStateType Source code
createStateValue Man page Source code
createSubject Source code
createSubjectContainerInteraction Man page Source code
createSubjectContainerInteractionState Source code
createSubjectContainerItxState Source code
createSubjectLabel Source code
createSubjectState Source code
createTag Man page Source code
createThing Source code
createThingKind Source code
createThingLabel Source code
createTreatmentGroup Source code
createTreatmentGroupLabel Source code
createTreatmentGroupState Source code
createValueKind Source code
createValueType Source code
create_analysis_group_values_from_fitData Source code
create_ls_kind Source code
curve_fit_controller_fitData_dataTable_to_fitData Source code
curve_fit_controller_fitData_response_to_data_table Source code
curve_fit_controller_getFitDataByCurveId Source code
curve_fit_controller_getFitDataByExperimentIdOrCodeName Source code
curve_fit_controller_getRawDataByCurveId Source code
curve_fit_controller_getRawDataByExperimentIdOrCodeName Source code
curve_fit_controller_rawData_response_to_data_table Source code
data.table_to_html_table Source code
dataOverTime Source code
dbExistsTable Source code
dbWriteTableMatchCol Man page Source code
deleteAcasEntity Man page Source code
deleteAnalysisGroupState Source code
deleteAnalysisGroupsByExperiment Man page Source code
deleteContainers Source code
deleteExperiment Source code
deleteExperimentValue Source code
deleteJSONURL Source code
deleteJSONURLWithTable Source code
deleteLinkFile Man page Source code
deleteSession Source code
deleteURLcheckStatus Man page Source code
descriptionDeps Source code
detailedExperimentChart Source code
doseResponse_update_user_flag Source code
dose_response Man page Source code
dose_response_fit Source code
dose_response_session Man page Source code
entityDefinitionToQueriesAndTypeMap Source code
experimentHistory Source code
experimentHistoryChart Source code
experimentsOverTime Source code
filterFlaggedPoints Source code
findbe1 Source code
fit_data_to_acas_experiment_response Man page Source code
flattenDeepEntity Man page Source code
flattenEntity Man page Source code
flattenLabel Man page Source code
flattenLabels Man page Source code
flattenState Man page Source code
flattenValue Man page Source code
flatten_list_in_data_table Source code
flatten_list_to_data.table Source code
formatEntityAsTsvAndUpload Man page Source code
generateLsTransaction Source code
generateSummaryStatistics Source code
getAcasEntities Man page Source code
getAcasEntity Man page Source code
getAcasFileLink Man page Source code
getAllDatabaseConnections Source code
getAllValueKinds Man page Source code
getAllValueTypes Man page Source code
getAutoLabelId Source code
getAutoLabels Source code
getBatchNumber Man page Source code
getBreadCrumbByContainerCode Source code
getCompoundName Man page Source code
getConfiguredEntityTypes Man page Source code
getContainerAndDefinitionContainerByContainerCodeNames Source code
getContainerByLabelText Man page Source code
getContainerCodesByLabels Source code
getContainersByCodeNames Source code
getCorporateIDs Source code
getCurrentLocationByCodeName Source code
getCurveData Man page Source code
getCurveIDAnalsysiGroupResults Source code
getDBString Source code
getDBType Source code
getDDictKinds Man page Source code
getDDictValuesByTypeKindFormat Man page Source code
getDatabaseConnection Source code
getDefinitionContainersByContainerCodeNames Source code
getEntity Man page Source code
getEntityByCodeName Man page Source code
getEntityById Man page Source code
getEntityCodesBySqlDD Man page Source code
getEntityCodesDD Man page Source code
getEntityIdsDD Man page Source code
getEntityIdsDDInternal Man page Source code
getErrorText Man page
getExperimentByCodeName Man page Source code
getExperimentById Man page Source code
getExperimentStatesByTypeAndKind Man page Source code
getExperimentValuesByTypeAndKind Man page Source code
getExperimentsByName Man page Source code
getFileEncoding Man page Source code
getLabelIdsDD Source code
getLabelIdsDDInternal Source code
getOrCreateDDictKinds Man page Source code
getOrCreateDDictTypes Man page Source code
getOrCreateEntityState Man page Source code
getOrCreateExperimentState Man page Source code
getPoints Source code
getPreferredId Man page Source code
getPreferredId2 Man page
getPreferredIdInternal Man page
getPreferredLabelText Man page Source code
getPreferredName Man page Source code
getProtocolByCodeName Man page Source code
getProtocolById Man page Source code
getProtocolsByName Man page Source code
getSSLString Man page Source code
getSection Man page Source code
getStateIdsDD Man page Source code
getStateIdsDDInternal Man page Source code
getStatesByTypeAndKind Man page Source code
getURLcheckStatus Man page Source code
getUploadedFilePath Man page Source code
getValueIdsDD Man page Source code
getValueIdsDDInternal Man page Source code
getValuesByTypeAndKind Man page Source code
getViewerLink Source code
getWarningText Man page
getWellCodeByPlateBarcodeAndWellName Source code
getWellCodesByContainerCodes Source code Source code
getWellContentByContainerLabels Source code
get_analysis_group_id_from_curve_id Source code
get_analysisgroup_values Source code
get_cached_curve_fit_parameters Source code
get_cached_fit_data_curve_id Source code
get_cached_raw_data Source code
get_curve_attributes.LL4 Source code
get_curve_attributes.LL4IC50 Source code
get_curve_attributes.LL4IC50DMax Source code
get_curve_attributes.MM2 Source code
get_curve_attributes.ki Source code
get_curve_attributes.substrateInhibition Source code
get_curve_curator_url Source code
get_curve_data Source code
get_curve_id_rendering_hint Source code
get_curve_id_state_id Source code
get_default_fit_settings Source code
get_dose_response_values Source code
get_drc_model Source code
get_entity_by_id Source code
get_experiment_metadata_value Source code
get_experiment_model_fit_status Source code
get_experiment_model_fit_transformation Source code
get_experiment_model_fit_type Source code
get_fit_data_curve_id Source code
get_fit_data_experiment_code Source code
get_fit_stats_drc_object Source code
get_goodness_of_fit_parameters_drc_object Source code
get_goodness_of_fit_stats_from_fixed_parameters Source code
get_goodness_of_fit_thresholds_from_rendering_options Source code
get_ls_state_from_entity Source code
get_ls_type Source code
get_model_fit_from_type_code Source code
get_or_create_value_kinds Man page Source code
get_parameters_drc_object Source code
get_plot_data_curve.LL4 Source code
get_plot_data_curve.LL4IC50 Source code
get_plot_data_curve.MM2 Source code
get_plot_data_curve.ki Source code
get_plot_data_curve.substrateInhibition Source code
get_plot_window Source code
get_point_stats Source code
get_protocol_curve_display_min_and_max_by_curve_id Source code
get_protocol_curve_display_min_and_max_by_protocol Source code
get_rendering_hint_options Source code
get_reported_parameters.LL4 Source code
get_reported_parameters.LL4IC50 Source code
get_reported_parameters.LL4IC50DMax Source code
get_reported_parameters.MM2 Source code
get_reported_parameters.ki Source code
get_reported_parameters.substrateInhibition Source code
get_saved_fitted_parameters.LL4 Source code
get_saved_fitted_parameters.LL4IC50 Source code
get_saved_fitted_parameters.MM2 Source code
get_saved_fitted_parameters.ki Source code
get_saved_fitted_parameters.substrateInhibition Source code
get_subjectgroup_values Source code
get_text_file_contents Man page Source code
get_treatmentgroup_values Source code
hello Man page Source code
installDeps Source code
interpretJSONBoolean Man page Source code
is.NULLorNA Source code
is_null_or_na Source code
ki.ssf Source code
ki_fct Source code
ki_fct.5 Source code
length0_or_na_to_null Source code
limitValueSizeForDB Source code
linkOldContainers Man page
list_to_data.table Source code Source code
loadSession Source code
loadTestData Source code
load_dose_response_test_data Source code
load_value_type_and_kinds Man page Source code
logger Man page Source code
materialize_analysis_group_results Source code
materialize_dose_response_views Source code
materialize_experiments Source code
materialize_protocols Source code
materialize_treatment_group_results Source code
meltBatchCodes Man page Source code
meltBatchCodes2 Man page
meltConcentrations Man page Source code
meltConcentrations2 Man page
meltTimes Man page Source code
meltTimes2 Man page
meltWideData Man page Source code
messenger Man page Source code
modify_or_remove_zero_dose_points Source code
modules Man page Source code
mostRecent Source code
moveFileToExperimentFolder Man page Source code
moveFileToFileServer Man page Source code
moveToLocation Source code
naIfNull Man page Source code
na_to_null Source code
numExperimentsChart Source code
parentAcasEntity Man page Source code
parse_command_line_args Source code
parse_params_curve_render_dr Source code
pickBestLabel Man page Source code
pickBestName Man page Source code
pingPong Man page Source code
plotCurve Man page Source code
postJSONURL Source code
postJSONURLWithTable Source code
postURLcheckStatus Man page Source code
prepareTableForDD Man page Source code
protocolsOverTime Source code
putJSONURL Source code
putJSONURLWithTable Source code
putURLcheckStatus Man page Source code
query Man page Source code
query_definition_list_to_sql Source code
query_replace_string_with_values Man page Source code
readConfigFile Man page Source code
readDelim Source code
readExcelOrCsv Man page Source code
readTsvDataFileDD Man page Source code
read_json_file Source code
remove_point_flags Source code
requestJSONURL Source code
requestJSONURLWithTable Source code
requestURL Source code
resizeContainerRowColumns Source code
returnListItem Source code
saveAcasEntities Man page Source code
saveAcasEntitiesInternal Source code
saveAcasEntity Man page Source code
saveAcasFile Man page Source code
saveAcasFileToExperiment Man page Source code
saveAgDataDD Man page Source code
saveAllViaDirectDatabase Man page Source code
saveAllViaTsv Man page Source code
saveAnalysisGroup Source code
saveAnalysisGroupState Source code
saveAnalysisGroupStates Source code
saveAnalysisGroups Source code
saveAnalysisResults Man page Source code
saveContainer Man page Source code
saveContainerContainerInteraction Source code
saveContainerContainerInteractions Source code
saveContainerLabel Source code
saveContainerLabels Source code
saveContainerState Source code
saveContainerStates Source code
saveContainers Source code
saveDataDirectDatabase Man page Source code
saveEntitiesDD Man page Source code
saveExperiment Source code
saveExperimentState Source code
saveExperimentStates Source code
saveExperimentValue Source code
saveExperimentValues Source code
saveExperiments Source code
saveInputParameters Man page Source code
saveLabelSequence Source code
saveLabelsDD Source code
saveLabelsFromLongFormat Man page Source code
saveLsInteractions Source code
saveProtocol Source code
saveProtocolLabel Source code
saveProtocols Source code
saveSession Source code
saveStatesDD Man page Source code
saveStatesFromLongFormat Man page Source code
saveSubjectContainerInteraction Source code
saveSubjectContainerInteractions Source code
saveSubjectDataDD Man page Source code
saveTgDataDD Man page Source code
saveThingLabels Source code
saveTsvData Man page Source code
saveValueKinds Man page Source code
saveValuesDD Man page Source code
saveValuesFromLongFormat Man page Source code
save_dose_response_data Source code
save_fit_data Source code
setExperimentHtml Man page Source code
setExperimentStatus Man page Source code
simple_to_advanced_fit_settings Man page Source code
sqliz Source code
startTransaction Source code
stopUser Man page Source code
stopUserAndLogInvalidJSON Man page
stopUserWithTime Man page Source code
subjectsOverTime Source code
substrateInhibition.3 Source code
substrateInhibitionssfct Source code
throwInTrash Source code
tryCatch.W.E Man page Source code
tryCatchLog Man page Source code
tsv_url_to_data_table Man page Source code
updateAcasEntity Man page Source code
updateAmountInWell Source code
updateContainersByContainerCodes Source code
updateFitSettings.Ki Source code
updateFitSettings.LL4 Source code
updateFitSettings.LL4IC50 Source code
updateFitSettings.MM2 Source code
updateFitSettings.substrateInhibition Source code
updateOrCreateStateValue Man page Source code
updateValueByTypeAndKind Man page Source code
updateWellContent Source code
update_experiment_model_fit_html Source code
update_experiment_model_fit_parameters Source code
update_experiment_model_fit_status Source code
update_experiment_model_fit_type Source code
update_materialized_analysis_group_results_batch_alias Source code
update_materialized_treatment_group_results_batch_alias Source code
update_or_replace_experiment_metadata_value Source code
update_point_flags Source code Source code
userError Man page
userStop Man page
userWarning Man page
validate Man page
validateApplicationSettings Source code
validateCharacter Man page Source code
validateDate Man page Source code
validateNumeric Man page Source code
validateSharedMetaData Man page Source code
validateValueKindsFromDataFrame Man page Source code
warnUser Man page Source code
weeklyStatistics Source code
writeToStdErr Source code
mcneilco/racas documentation built on Feb. 22, 2024, 10:07 p.m.

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