Files in mcneilco/racas
R Package for ACAS

.Rbuildignore
.dockerignore
.gitignore
DESCRIPTION
Dockerfile
Dockerfile.XLConnect
Dockerfile.mailR
Dockerfile.repo
LICENSE
NAMESPACE
NEWS.md R/JSON_library.R R/api.R R/applicationSettings.R R/batchAnnotation.R R/campaign.R R/containers.R R/createHtmlSummary.R R/createNewACASExperiment.R R/directDatabaseSave.R R/dose_response.R R/dose_response_api.R R/entityDefinitions.R R/entityMeta.R R/errorLogging.R R/fileRead.R R/hello.R R/installation.R R/logger.R R/longFormatSave.R R/messenger.R R/model_fit.R R/objectHelper.R R/onLoad.R R/pingPong.R R/preferredBatchCode.R R/query.R R/rendering.R R/sel.R R/session.R R/summaryStatistics.R R/testing.R R/tsvSave.R R/updateExperimentMetadata.R R/utilities.R
data/affinityBindingData.rda
data/analysisGroupValues.rda
data/curveData.rda
data/example-ec50-fitData-fitted.rda
data/example-ec50-fitData.rda
data/exampleFitData.rda
data/ivPKCurveData.rda
data/kiData.rda
data/overlayIVPKCurveData.rda
data/poIVPKCurveData.rda
data/poPKCurveData.rda
data/pointData.rda
inst/COPYRIGHT.txt
inst/conf/default-ec50-fitSettings.json
inst/conf/default-ic50-fitSettings.json
inst/conf/default-ki-fitSettings.json
inst/conf/default-km-fitSettings.json
inst/conf/default-substrateInhibition-fitSettings.json
inst/conf/definition-kifit.json
inst/conf/definition-ll4.json
inst/conf/definition-ll4IC50.json
inst/conf/definition-mm2.json
inst/conf/definition-scatter.json
inst/conf/definition-substrateInhibition.json
inst/docs/Example-Dose-Response-SEL-KD.xlsx
inst/docs/Example-Dose-Response-SEL.xlsx
inst/docs/example-dose-response-ec50-explicit.xlsx
inst/docs/example-simple-fitsettings-ki.json
inst/docs/example-simple-fitsettings-ll4.json
inst/docs/example-simple-fitsettings-mm2.json
inst/docs/scratch.R inst/docs/scratchPrivate.R
inst/docs/value_type_and_kinds.csv
inst/rmd/equations/ki.txt
inst/rmd/equations/latex-equations.txt
inst/rmd/equations/ll4.txt
inst/rmd/equations/ll4IC50.txt
inst/rmd/equations/mm2.txt
inst/rmd/equations/substrateInhibition.txt
inst/rmd/fitDataToResponse_acas.html
inst/rmd/fitDataToResponse_acas.rmd inst/rmd/fitDataToResponse_error.rmd
inst/rmd/racas_container.css
inst/rmd/summaryStatisticsGraphs.rmd inst/rmd/summaryStatisticsHome.rmd
inst/rmd/summaryStats.css
inst/tests/data/UTF-16LE-test.txt
inst/tests/data/UTF-16LE-test2.txt
inst/tests/data/addFileLinkOutput_normal.Rda
inst/tests/data/deleteLinkFileInput_experiment.Rda
inst/tests/data/doseResponse/acceptedresults/apply_inactive_rules_inactive.rda
inst/tests/data/doseResponse/acceptedresults/apply_inactive_rules_potent.rda
inst/tests/data/doseResponse/acceptedresults/apply_parameter_rules_goodness_of_fits.rda
inst/tests/data/doseResponse/acceptedresults/apply_parameter_rules_limits.rda
inst/tests/data/doseResponse/acceptedresults/biphasic.rda
inst/tests/data/doseResponse/acceptedresults/capture_output.rda
inst/tests/data/doseResponse/acceptedresults/categorize_fit_data.rda
inst/tests/data/doseResponse/acceptedresults/data.table_to_html_table.rda
inst/tests/data/doseResponse/acceptedresults/doseResponse_ll4.rda
inst/tests/data/doseResponse/acceptedresults/dose_response_fit.rda
inst/tests/data/doseResponse/acceptedresults/dose_response_ll4.rda
inst/tests/data/doseResponse/acceptedresults/fit_data_to_acas_experiment_response.rda
inst/tests/data/doseResponse/acceptedresults/flatten_list_to_data.table.rda
inst/tests/data/doseResponse/acceptedresults/get_default_fit_settings_ll4.rda
inst/tests/data/doseResponse/acceptedresults/get_drc_model.rda
inst/tests/data/doseResponse/acceptedresults/get_fit_stats_drc_object.rda
inst/tests/data/doseResponse/acceptedresults/get_goodness_of_fit_parameters_drc_object.rda
inst/tests/data/doseResponse/acceptedresults/get_parameters_drc_object.rda
inst/tests/data/doseResponse/acceptedresults/get_plot_window.rda
inst/tests/data/doseResponse/acceptedresults/get_point_stats.rda
inst/tests/data/doseResponse/acceptedresults/get_reported_parameters.rda
inst/tests/data/doseResponse/acceptedresults/knit2html_bug_fix.rda
inst/tests/data/doseResponse/acceptedresults/simple_to_advanced_fit_settings_ll4.rda
inst/tests/data/doseResponse/conf/default-ec50-fitSettings.json
inst/tests/data/doseResponse/conf/default-kd-fitSettings.json
inst/tests/data/doseResponse/conf/default-ki-fitSettings.json
inst/tests/data/doseResponse/conf/default_fitSettings_ll4.json
inst/tests/data/doseResponse/conf/default_fitSettings_mm2.json
inst/tests/data/doseResponse/conf/example_simple_fitsettings_ll4.json
inst/tests/data/doseResponse/conf/example_simple_fitsettings_mm2.json
inst/tests/data/doseResponse/data/fitData_ll4.rda
inst/tests/data/doseResponse/data/fitData_ll4_fitted.rda
inst/tests/data/doseResponse/docs/Example-Dose-Response-SEL-LL4.xlsx
inst/tests/data/flattenDeepEntityInput_normal.Rda
inst/tests/data/flattenDeepEntityOutput_normal.Rda
inst/tests/data/htmlSummaryNormal_output.Rda
inst/tests/data/linkOldContainersOutput_hasMix.Rda
inst/tests/data/linkOldContainersOutput_hasMixPref.Rda
inst/tests/data/linkOldContainersOutput_hasNew.Rda
inst/tests/data/linkOldContainersOutput_hasOld.Rda
inst/tests/data/linkOldContainersOutput_nonPref.Rda
inst/tests/data/linkOldContainersOutput_nullPrefix.Rda
inst/tests/data/linkOldContainers_normal.Rda
inst/tests/data/meltBatchCodesOutput_normal.Rda
inst/tests/data/saveAnalysisResults_output.Rda
inst/tests/test-getSSLString.R inst/tests/test_JSON_library.R inst/tests/test_batchAnnotation.R inst/tests/test_createHtmlSummary.R inst/tests/test_doseResponse.R inst/tests/test_flattenDeepEntity.R inst/tests/test_longFormatSave.R inst/tests/test_messenger.R inst/tests/test_query.R man/Messenger.Rd man/ModelFit-class.Rd man/acasEntityHierarchy.Rd man/addError.Rd man/addFileLink.Rd man/analysis_group_save_from_tsv.Rd man/api_createProtocol.Rd man/api_doseResponse_experiment.Rd man/api_doseResponse_fitData_to_curveDetail.Rd man/appendCodeNames.Rd man/appendToContainerName.Rd man/applicationSettings.Rd man/changeEntityMode.Rd man/checkExistence.Rd man/checkValueKinds.Rd man/convertSELExperimentMetaDataToSEL.Rd man/createCodeTablesFromJsonArray.Rd man/createHtmlSummary.Rd man/createLogger.Rd man/createNamedExperiment.Rd man/createSELCalculatedResults.Rd man/createSELExperimentMetaData.Rd man/createSELFile.Rd man/createSELRawResults.Rd man/createStateValue.Rd man/createSubjectContainerInteraction.Rd man/createTag.Rd man/dbWriteTableMatchCol.Rd man/deleteAnalysisGroupsByExperiment.Rd man/deleteLinkFile.Rd man/dose_response.Rd man/dose_response_session.Rd man/fit_data_to_acas_experiment_response.Rd man/flattenDeepEntity.Rd man/flattenEntity.Rd man/flattenLabel.Rd man/flattenLabels.Rd man/flattenState.Rd man/flattenValue.Rd man/formatEntityAsTsvAndUpload.Rd man/getAcasFileLink.Rd man/getAllValueKinds.Rd man/getAllValueTypes.Rd man/getCompoundName.Rd man/getConfiguredEntityTypes.Rd man/getContainerByLabelText.Rd man/getCurveData.Rd man/getDDictKinds.Rd man/getDDictValuesByTypeKindFormat.Rd man/getEntity.Rd man/getEntityById.Rd man/getErrorText.Rd man/getExperimentById.Rd man/getExperimentStatesByTypeAndKind.Rd man/getExperimentValuesByTypeAndKind.Rd man/getExperimentsByName.Rd man/getFileEncoding.Rd man/getOrCreateDDictKinds.Rd man/getOrCreateDDictTypes.Rd man/getOrCreateEntityState.Rd man/getOrCreateExperimentState.Rd man/getPreferredId.Rd man/getPreferredId2.Rd man/getPreferredIdInternal.Rd man/getPreferredLabelText.Rd man/getPreferredName.Rd man/getProtocolById.Rd man/getProtocolsByName.Rd man/getSSLString.Rd man/getSection.Rd man/getStatesByTypeAndKind.Rd man/getURLcheckStatus.Rd man/getUploadedFilePath.Rd man/getValuesByTypeAndKind.Rd man/getWarningText.Rd man/get_or_create_value_kinds.Rd man/get_text_file_contents.Rd man/hello.Rd man/interpretJSONBoolean.Rd man/linkOldContainers.Rd man/load_value_type_and_kinds.Rd man/logger.Rd man/meltBatchCodes.Rd man/meltBatchCodes2.Rd man/meltConcentrations.Rd man/meltConcentrations2.Rd man/meltTimes.Rd man/meltTimes2.Rd man/meltWideData.Rd man/modules.Rd man/moveFileToExperimentFolder.Rd man/moveFileToFileServer.Rd man/naIfNull.Rd man/parentAcasEntity.Rd man/pickBestLabel.Rd man/pickBestName.Rd man/pingPong.Rd man/plotCurve.Rd man/prepareTableForDD.Rd man/query.Rd man/query_replace_string_with_values.Rd man/readConfigFile.Rd man/readExcelOrCsv.Rd man/readTsvDataFileDD.Rd man/saveAcasEntities.Rd man/saveAcasFile.Rd man/saveAcasFileToExperiment.Rd man/saveAllViaDirectDatabase.Rd man/saveAllViaTsv.Rd man/saveAnalysisResults.Rd man/saveContainer.Rd man/saveDataDirectDatabase.Rd man/saveEntitiesDD.Rd man/saveInputParameters.Rd man/saveLabelsFromLongFormat.Rd man/saveStatesFromLongFormat.Rd man/saveTsvData.Rd man/saveValueKinds.Rd man/saveValuesDD.Rd man/saveValuesFromLongFormat.Rd man/setExperimentHtml.Rd man/setExperimentStatus.Rd man/simple_to_advanced_fit_settings.Rd man/stopUser.Rd man/tryCatch.W.E.Rd man/tryCatchLog.Rd man/tsv_url_to_data_table.Rd man/updateOrCreateStateValue.Rd man/updateValueByTypeAndKind.Rd man/validate.Rd man/validateSharedMetaData.Rd man/validateValueKindsFromDataFrame.Rd man/warnUser.Rd tests/test-all.R
mcneilco/racas documentation built on May 22, 2019, 3:13 p.m.