Files in metrumresearchgroup/rbabylon
R package for babylon

.Rbuildignore
.drone.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/aaa.R R/classes.R R/copy-model-from.R R/get-based-on.R R/get-path-from-object.R R/modify-model-field.R R/new-model.R R/param-estimates.R R/param-labels.R R/rbabylon.R R/read-output.R R/run-log.R R/submit-model.R R/summary.R R/use-bbi.R R/utils-pipe.R R/utils.R R/zzz.R README.Rmd README.md
_pkgdown.yml
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/getting-started.html
docs/articles/index.html
docs/articles/parameter-labels.html
docs/articles/using-based-on.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/add_bbi_args.html
docs/reference/add_config.html
docs/reference/apply_indices.html
docs/reference/as_model.html
docs/reference/bbi_current_release.html
docs/reference/bbi_dry_run.html
docs/reference/bbi_exec.html
docs/reference/bbi_help.html
docs/reference/bbi_init.html
docs/reference/bbi_version.html
docs/reference/build_bbi_param_list.html
docs/reference/build_matrix_indices.html
docs/reference/build_path_from_mod_obj.html
docs/reference/check_bbi_exe.html
docs/reference/check_bbi_version_constraint.html
docs/reference/check_file.html
docs/reference/check_lst_file.html
docs/reference/check_model_object.html
docs/reference/check_model_object_list.html
docs/reference/check_nonmem_args.html
docs/reference/check_nonmem_table_output.html
docs/reference/check_output_dir.html
docs/reference/check_status_code.html
docs/reference/clean_ctl.html
docs/reference/combine_directory_path.html
docs/reference/combine_list_objects.html
docs/reference/config_log.html
docs/reference/copy_control_stream.html
docs/reference/copy_model_from.html
docs/reference/copy_nonmem_model_from.html
docs/reference/create_bbi_object.html
docs/reference/create_object.html
docs/reference/current_release.html
docs/reference/enforce_length.html
docs/reference/find_config_file_path.html
docs/reference/find_model_file_path.html
docs/reference/find_yaml_file_path.html
docs/reference/format_cmd_args.html
docs/reference/get_based_on.html
docs/reference/get_model_directory.html
docs/reference/get_model_id.html
docs/reference/get_path_from_object.html
docs/reference/get_yaml_path.html
docs/reference/index.html
docs/reference/install_menu.html
docs/reference/is_diag.html
docs/reference/is_valid_nonmem_extension.html
docs/reference/is_valid_yaml_extension.html
docs/reference/linux_install_commands.html
docs/reference/model_summary.html
docs/reference/modify_model_field.html
docs/reference/new_ext.html
docs/reference/new_model.html
docs/reference/nonmem_summary.html
docs/reference/param_estimates.html
docs/reference/param_labels.html
docs/reference/parse_args_list.html
docs/reference/parse_param_comment.html
docs/reference/pipe.html
docs/reference/plot_nonmem_table_df.html
docs/reference/print_nonmem_args.html
docs/reference/rbabylon.html
docs/reference/read_model.html
docs/reference/reconcile_yaml.html
docs/reference/replace_bbi_args.html
docs/reference/run_log.html
docs/reference/run_log_entry.html
docs/reference/safe_based_on.html
docs/reference/safe_read_model.html
docs/reference/save_model_yaml.html
docs/reference/set_model_directory.html
docs/reference/stop_get_fail_msg.html
docs/reference/stop_get_scalar_msg.html
docs/reference/stop_get_scaler_msg.html
docs/reference/strict_mode_error.html
docs/reference/submit_model.html
docs/reference/submit_models.html
docs/reference/submit_nonmem_model.html
docs/reference/submit_nonmem_models.html
docs/reference/suppressSpecificWarning.html
docs/reference/use_bbi.html
docs/reference/verify_model_yaml_integrity.html
docs/reference/version_message.html
inst/extdata/acop.csv
inst/nonmem/.gitignore
inst/nonmem/1.ctl
inst/nonmem/1/.gitignore
inst/nonmem/1/1.clt
inst/nonmem/1/1.coi
inst/nonmem/1/1.cor
inst/nonmem/1/1.cov
inst/nonmem/1/1.cpu
inst/nonmem/1/1.ctl
inst/nonmem/1/1.ctl.out
inst/nonmem/1/1.ext
inst/nonmem/1/1.grd
inst/nonmem/1/1.lst
inst/nonmem/1/1.phi
inst/nonmem/1/1.sh
inst/nonmem/1/1.shk
inst/nonmem/1/1.shm
inst/nonmem/1/1.xml
inst/nonmem/1/Run_1.o1
inst/nonmem/1/bbi_config.json
inst/nonmem/1/grid.sh
inst/param_examples/510.ctl
inst/param_examples/510.yaml
inst/param_examples/510/510
inst/param_examples/510/510.clt
inst/param_examples/510/510.cnv
inst/param_examples/510/510.coi
inst/param_examples/510/510.cor
inst/param_examples/510/510.cov
inst/param_examples/510/510.ctl
inst/param_examples/510/510.ext
inst/param_examples/510/510.grd
inst/param_examples/510/510.lst
inst/param_examples/510/510.phi
inst/param_examples/510/510.shk
inst/param_examples/510/510.shm
inst/param_examples/510/510.tab
inst/param_examples/510/510.xml
inst/param_examples/510/510par.tab
inst/param_examples/babylon.yaml
man/apply_indices.Rd man/as_model.Rd man/bbi_current_release.Rd man/bbi_dry_run.Rd man/bbi_exec.Rd man/bbi_help.Rd man/bbi_init.Rd man/bbi_version.Rd man/build_bbi_param_list.Rd man/build_matrix_indices.Rd man/build_path_from_mod_obj.Rd man/check_bbi_exe.Rd man/check_bbi_version_constraint.Rd man/check_file.Rd man/check_lst_file.Rd man/check_model_object.Rd man/check_model_object_list.Rd man/check_nonmem_args.Rd man/check_nonmem_table_output.Rd man/check_output_dir.Rd man/check_status_code.Rd man/clean_ctl.Rd man/combine_directory_path.Rd man/combine_list_objects.Rd man/config_log.Rd man/copy_control_stream.Rd man/copy_model_from.Rd man/copy_nonmem_model_from.Rd man/create_bbi_object.Rd man/current_release.Rd man/enforce_length.Rd man/find_config_file_path.Rd man/find_model_file_path.Rd man/find_yaml_file_path.Rd man/format_cmd_args.Rd man/get_based_on.Rd man/get_model_directory.Rd man/get_model_id.Rd man/get_path_from_object.Rd man/install_menu.Rd man/is_diag.Rd man/is_valid_nonmem_extension.Rd man/is_valid_yaml_extension.Rd man/linux_install_commands.Rd man/model_summary.Rd man/modify_model_field.Rd man/new_ext.Rd man/new_model.Rd man/nonmem_summary.Rd man/param_estimates.Rd man/param_labels.Rd man/parse_args_list.Rd man/parse_param_comment.Rd man/pipe.Rd man/plot_nonmem_table_df.Rd man/print_nonmem_args.Rd man/rbabylon.Rd man/read_model.Rd man/run_log.Rd man/run_log_entry.Rd man/safe_based_on.Rd man/safe_read_model.Rd man/save_model_yaml.Rd man/stop_get_fail_msg.Rd man/stop_get_scalar_msg.Rd man/strict_mode_error.Rd man/submit_model.Rd man/submit_models.Rd man/submit_nonmem_model.Rd man/submit_nonmem_models.Rd man/suppressSpecificWarning.Rd man/use_bbi.Rd man/verify_model_yaml_integrity.Rd man/version_message.Rd
rbabylon.Rproj
tests/testthat.R
tests/testthat/data/101_PARAMTBL.rds
tests/testthat/data/510_PARAMTBL.rds
tests/testthat/data/510_fixed_PARAMTBL.rds
tests/testthat/data/acop.csv
tests/testthat/data/acop_ext_ref_floor0_200520.rds
tests/testthat/data/acop_ext_ref_floorNULL_200520.rds
tests/testthat/data/acop_grd_ref_floor0_200520.rds
tests/testthat/data/acop_grd_ref_floor10_200520.rds
tests/testthat/data/acop_grd_ref_floorNULL_200520.rds
tests/testthat/data/acop_param_table_ref_200228.rds
tests/testthat/data/acop_param_table_ref_200423_randeff.rds
tests/testthat/data/acop_summary_obj_ref_200616.rds
tests/testthat/data/read-output-reference.R tests/testthat/data/test-param-labels-ref.R tests/testthat/data/test-workflow-ref.R
tests/testthat/data/tidynm_extdata/101.ctl
tests/testthat/data/tidynm_extdata/101/101.cat
tests/testthat/data/tidynm_extdata/101/101.clt
tests/testthat/data/tidynm_extdata/101/101.coi
tests/testthat/data/tidynm_extdata/101/101.cor
tests/testthat/data/tidynm_extdata/101/101.cov
tests/testthat/data/tidynm_extdata/101/101.ctl
tests/testthat/data/tidynm_extdata/101/101.ext
tests/testthat/data/tidynm_extdata/101/101.grd
tests/testthat/data/tidynm_extdata/101/101.log.xml
tests/testthat/data/tidynm_extdata/101/101.lst
tests/testthat/data/tidynm_extdata/101/101.msf
tests/testthat/data/tidynm_extdata/101/101.phi
tests/testthat/data/tidynm_extdata/101/101.shk
tests/testthat/data/tidynm_extdata/101/101.shm
tests/testthat/data/tidynm_extdata/101/101.tab
tests/testthat/data/tidynm_extdata/101/101.xml
tests/testthat/data/tidynm_extdata/101/101par.tab
tests/testthat/data/tidynm_extdata/510.ctl
tests/testthat/data/tidynm_extdata/510/510
tests/testthat/data/tidynm_extdata/510/510.clt
tests/testthat/data/tidynm_extdata/510/510.cnv
tests/testthat/data/tidynm_extdata/510/510.coi
tests/testthat/data/tidynm_extdata/510/510.cor
tests/testthat/data/tidynm_extdata/510/510.cov
tests/testthat/data/tidynm_extdata/510/510.ctl
tests/testthat/data/tidynm_extdata/510/510.ext
tests/testthat/data/tidynm_extdata/510/510.grd
tests/testthat/data/tidynm_extdata/510/510.lst
tests/testthat/data/tidynm_extdata/510/510.phi
tests/testthat/data/tidynm_extdata/510/510.shk
tests/testthat/data/tidynm_extdata/510/510.shm
tests/testthat/data/tidynm_extdata/510/510.tab
tests/testthat/data/tidynm_extdata/510/510.xml
tests/testthat/data/tidynm_extdata/510/510par.tab
tests/testthat/data/tidynm_extdata/510_fixed.ctl
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.clt
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.coi
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.cor
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.cov
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.ctl
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.ext
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.grd
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.lst
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.phi
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.shk
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.shm
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.tab
tests/testthat/data/tidynm_extdata/510_fixed/510_fixed.xml
tests/testthat/data/tidynm_extdata/510_fixed/510_fixedpar.tab
tests/testthat/data/tidynm_extdata/511.ctl
tests/testthat/data/tidynm_extdata/511/511.ctl
tests/testthat/data/tidynm_extdata/511/511.ext
tests/testthat/data/tidynm_extdata/511/511.grd
tests/testthat/data/tidynm_extdata/511/511.lst
tests/testthat/data/tidynm_extdata/511/511.phi
tests/testthat/data/tidynm_extdata/511/511.shk
tests/testthat/data/tidynm_extdata/511/511.shm
tests/testthat/data/tidynm_extdata/511/511.tab
tests/testthat/data/tidynm_extdata/511/511.xml
tests/testthat/data/tidynm_extdata/511/511par.tab
tests/testthat/data/utils-reference.R tests/testthat/helpers.R
tests/testthat/model-examples/1.ctl
tests/testthat/model-examples/1.yaml
tests/testthat/model-examples/1/.gitignore
tests/testthat/model-examples/1/1.clt
tests/testthat/model-examples/1/1.coi
tests/testthat/model-examples/1/1.cor
tests/testthat/model-examples/1/1.cov
tests/testthat/model-examples/1/1.cpu
tests/testthat/model-examples/1/1.ctl
tests/testthat/model-examples/1/1.ctl.out
tests/testthat/model-examples/1/1.ext
tests/testthat/model-examples/1/1.grd
tests/testthat/model-examples/1/1.lst
tests/testthat/model-examples/1/1.phi
tests/testthat/model-examples/1/1.sh
tests/testthat/model-examples/1/1.shk
tests/testthat/model-examples/1/1.shm
tests/testthat/model-examples/1/1.xml
tests/testthat/model-examples/1/Run_1.o1
tests/testthat/model-examples/1/babylon.yaml
tests/testthat/model-examples/1/bbi_config.json
tests/testthat/model-examples/1/grid.sh
tests/testthat/test-classes.R tests/testthat/test-copy-model-from.R tests/testthat/test-get-based-on.R tests/testthat/test-get-path-from-object.R tests/testthat/test-modify-model-field.R tests/testthat/test-new-model.R tests/testthat/test-param-estimates.R tests/testthat/test-param-labels.R tests/testthat/test-rbabylon.R tests/testthat/test-read-output.R tests/testthat/test-run-log.R tests/testthat/test-submit-model.R tests/testthat/test-summary.R tests/testthat/test-use-bbi.R tests/testthat/test-utils.R tests/testthat/test-workflow-bbi.R tests/testthat/test-workflow-dryrun.R
tests/testthat/test-yaml/zz_fail_bad_modpath.yaml
tests/testthat/test-yaml/zz_fail_no_modtype.yaml
tests/testthat/test-yaml/zz_pass_no_modpath.yaml
vignettes/.gitignore
vignettes/getting-started.Rmd vignettes/parameter-labels.Rmd vignettes/using-based-on.Rmd
metrumresearchgroup/rbabylon documentation built on June 29, 2020, 5:04 a.m.