overlap: Overlap Measure
In microbiome/microbiome: Microbiome Analytics
overlap R Documentation
Overlap Measure
Description
Quantify microbiota 'overlap' between samples.
Usage
overlap(x, detection = 0)
Arguments
x
phyloseq-class object
detection
Detection threshold.
Value
Overlap matrix
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
Bashan, A., Gibson, T., Friedman, J. et al.
Universality of human microbial dynamics.
Nature 534, 259–262 (2016). https://doi.org/10.1038/nature18301
Examples
data(atlas1006)
o <- overlap(atlas1006, detection = 0.1/100)
microbiome/microbiome documentation built on Aug. 22, 2023, 7:12 a.m.
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| overlap | R Documentation |
Overlap Measure
Description
Quantify microbiota 'overlap' between samples.
Usage
overlap(x, detection = 0)
Arguments
x |
|
detection |
Detection threshold. |
Value
Overlap matrix
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
Bashan, A., Gibson, T., Friedman, J. et al. Universality of human microbial dynamics. Nature 534, 259–262 (2016). https://doi.org/10.1038/nature18301
Examples
data(atlas1006)
o <- overlap(atlas1006, detection = 0.1/100)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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