psmelt2: Convert 'phyloseq-class' object to long data format
In microbiome/microbiome: Microbiome Analytics
psmelt2 R Documentation
Convert phyloseq-class object to long data format
Description
An alternative to psmelt function from
phyloseq-class object.
Usage
psmelt2(x, sample.column = NULL, feature.column = NULL)
Arguments
x
phyloseq-class object
sample.column
A single character string specifying name
of the column to hold sample names.
feature.column
A single character string specifying name
of the column to hold OTU or ASV names.
Value
A tibble in long format
Author(s)
Contact: Sudarshan A. Shetty sudarshanshetty9@gmail.com
Examples
data("dietswap")
ps.melt <- psmelt2(dietswap, sample.column="SampleID",
feature.column="Feature")
head(ps.melt)
microbiome/microbiome documentation built on Aug. 22, 2023, 7:12 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| psmelt2 | R Documentation |
Convert phyloseq-class object to long data format
Description
An alternative to psmelt function from
phyloseq-class object.
Usage
psmelt2(x, sample.column = NULL, feature.column = NULL)
Arguments
x |
|
sample.column |
A single character string specifying name of the column to hold sample names. |
feature.column |
A single character string specifying name of the column to hold OTU or ASV names. |
Value
A tibble in long format
Author(s)
Contact: Sudarshan A. Shetty sudarshanshetty9@gmail.com
Examples
data("dietswap")
ps.melt <- psmelt2(dietswap, sample.column="SampleID",
feature.column="Feature")
head(ps.melt)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.