remove_samples: Exclude Samples
In microbiome/microbiome: Microbiome Analytics
View source: R/remove_samples.R
remove_samples R Documentation
Exclude Samples
Description
Filter out selected samples from a phyloseq object.
Usage
remove_samples(samples = NULL, x)
Arguments
samples
Names of samples to be removed.
x
phyloseq-class object
Details
This complements the phyloseq function prune_samples by providing
a way to exclude given groups from a phyloseq object.
Value
Filtered phyloseq object.
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
To cite the microbiome R package, see citation('microbiome')
See Also
phyloseq::prune_samples, phyloseq::subset_samples
Examples
data(dietswap)
pseq <- remove_samples(c("Sample-182", "Sample-222"), dietswap)
microbiome/microbiome documentation built on Aug. 22, 2023, 7:12 a.m.
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View source: R/remove_samples.R
| remove_samples | R Documentation |
Exclude Samples
Description
Filter out selected samples from a phyloseq object.
Usage
remove_samples(samples = NULL, x)
Arguments
samples |
Names of samples to be removed. |
x |
|
Details
This complements the phyloseq function prune_samples by providing a way to exclude given groups from a phyloseq object.
Value
Filtered phyloseq object.
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
To cite the microbiome R package, see citation('microbiome')
See Also
phyloseq::prune_samples, phyloseq::subset_samples
Examples
data(dietswap)
pseq <- remove_samples(c("Sample-182", "Sample-222"), dietswap)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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