spreadplot: Abundance Spread Plot
In microbiome/microbiome: Microbiome Analytics
spreadplot R Documentation
Abundance Spread Plot
Description
Visualize abundance spread for OTUs
Usage
spreadplot(x, trunc = 0.001/100, alpha = 0.15, width = 0.35)
Arguments
x
phyloseq-class object; or a data.frame with fields
"otu" (otu name); "sample" (sample name); and "abundance"
(otu abundance in the given sample)
trunc
Truncate abundances lower than this to zero
alpha
Alpha level for point transparency
width
Width for point spread
Value
ggplot2 object
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
data(dietswap)
p <- spreadplot(transform(dietswap, "compositional"))
microbiome/microbiome documentation built on Aug. 22, 2023, 7:12 a.m.
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| spreadplot | R Documentation |
Abundance Spread Plot
Description
Visualize abundance spread for OTUs
Usage
spreadplot(x, trunc = 0.001/100, alpha = 0.15, width = 0.35)
Arguments
x |
|
trunc |
Truncate abundances lower than this to zero |
alpha |
Alpha level for point transparency |
width |
Width for point spread |
Value
ggplot2 object
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
data(dietswap)
p <- spreadplot(transform(dietswap, "compositional"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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