ztransform: Z Transformation
In microbiome/microbiome: Microbiome Analytics
ztransform R Documentation
Z Transformation
Description
Z transform for matrices
Usage
ztransform(x, which, log10 = TRUE)
Arguments
x
a matrix
which
margin
log10
apply log10 transformation before Z
Details
Performs centering (to zero) and scaling (to unit
variance) across samples for each taxa.
Value
Z-transformed matrix
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
#data(peerj32)
#pseqz <- ztransform(abundances(peerj32$phyloseq))
microbiome/microbiome documentation built on Aug. 22, 2023, 7:12 a.m.
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| ztransform | R Documentation |
Z Transformation
Description
Z transform for matrices
Usage
ztransform(x, which, log10 = TRUE)
Arguments
x |
a matrix |
which |
margin |
log10 |
apply log10 transformation before Z |
Details
Performs centering (to zero) and scaling (to unit variance) across samples for each taxa.
Value
Z-transformed matrix
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
#data(peerj32)
#pseqz <- ztransform(abundances(peerj32$phyloseq))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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