biogeogut: Comparison of small intestine and stool microbiota

In microsud/microbiomeutilities-shiny: microbiomeutilities: An R package with utility functions for the microbiome R package

Description

Data from a Shetty SA, et al. Bacterial community was profilled using V4 (EMP primers) and analysed QIIME. Coolosed ref based OTU picking. Taxonomic assignmetn was done using RDP classifier (80

Usage

data("biogeogut")

Format

An object of class "phyloseq".

Examples

## Not run: 
library(microbiomeutilities)
data("biogeogut")
pseq <- biogeogut
print(biogeogut)
          
## End(Not run)
          

microsud/microbiomeutilities-shiny documentation built on May 7, 2019, 9:38 a.m.