plot_taxa_cv: Coefficient of variations

In microsud/microbiomeutilities-shiny: microbiomeutilities: An R package with utility functions for the microbiome R package

Description

Plots CV for OTUs/ASVs.

Usage

plot_taxa_cv(x)

Arguments

x	phyloseq-class object

Details

Check if there are spurious OTUs/ASVs.

Value

A ggplot plot object.

Examples

## Not run: 
  # Example data
    library(microbiome)
    library(microbiomeUtilities)
    data("biogeogut")
    p0 <- biogeogut
    ps.rel <- microbiome::transform(ps, "compositional")
    p <- plot_taxa_cv(ps.rel)
    print(p)
          
## End(Not run)

microsud/microbiomeutilities-shiny documentation built on May 7, 2019, 9:38 a.m.