Description Usage Arguments Details Value Examples
View source: R/format_to_besthit.R
Format the phyloseq object to add the best taxonomy in phyloseq object (tax_table and otu_table).
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Most commonly it is observed that the taxonomy file has classification until a given taxonomic level.
row.names for both tax_table and otu_table have best hit, until maximun genus level (species classification with short amplicons is a myth)is made available. This code is a
slight modification of the code from ampvis phyloseq-class
.
Here, we directly take the phyloseq object as input and make the necessary formatting.
phyloseq-class
object.
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