Description Usage Arguments Value Examples
Faster alternative to psmelt function from phyloseq-class
object.
1 | phy_to_ldf(x, transform.counts)
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x |
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transform.counts |
Data transform to be used in plotting (but not in sample/taxon ordering). The options are 'Z-OTU', 'Z-Sample', 'log10' and 'compositional'. See the |
A data frame in long format with appropriate transfomation if requested.
1 2 3 4 5 6 7 8 9 | ## Not run:
# Example data
library(microbiomeutilities)
data("biogeogut")
pseq <- biogeogut
pseq_df <- phy_to_ldf(pseq, transform.counts = NULL)
## End(Not run)
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