plot_ReadDistribution: Distribution of reads

In microsud/microbiomeutilities-shiny: microbiomeutilities: An R package with utility functions for the microbiome R package

Description

Plots distribution of reads.

Usage

plot_ReadDistribution(x, groups, plot.type = c("density", "histogram"))

Arguments

x	phyloseq-class object
groups	Metadata variable to check for groups based sequencing effort.
plot.type	either density or histogram plot

Value

A ggplot plot object.

Author(s)

Contact: SUdarshan Shetty [e-mail]

Examples

## Not run: 
  # Example data
    library(microbiome)
    data(DynamicIBD)
    ps0 <- DynamicIBD
    p <- plot_ReadDistribution(ps0, groups="ibd_subtype", plot.type= "density")
          
## End(Not run)

microsud/microbiomeutilities-shiny documentation built on May 7, 2019, 9:38 a.m.