get_microbiome_data: Download test microbiome data

In microsud/microbiomeutilities-shiny: microbiomeutilities: An R package with utility functions for the microbiome R package

Description

Test microbiome data in phyloseq format.

Usage

get_microbiome_data(studynumber = 1)

Arguments

studynumber

A numerical value corresponsing to the one given by list_microbiome_data()

Details

You can download few example datasets in phyloseq format from Duvallet et al 2017 https://www.nature.com/articles/s41467-017-01973-8.pdf?origin=ppub. The source file for these data is the microbiomedatarepo https://github.com/microsud/microbiomedatarepo.

Value

phyloseq-class object.

Examples

## Not run: 
  # Example data
    library(microbiome)
    library(microbiomeUtilities)
    ps1 <- get_microbiome_data(studynumber = 1)
    # this will download the first study listed in list_microbiome_data() function
    print(p)
          
## End(Not run)

microsud/microbiomeutilities-shiny documentation built on May 7, 2019, 9:38 a.m.