README.md
In miracum/clearly-sigident.func: Sigident Functional Analysis

sigident.func (!!! currently under development !!!)

This is the repository of the R package sigident.func. It provides functional analysis and is part of the sigident package framework: https://github.com/miracum/clearly-sigident

Overview

The functional analysis includes the following steps: DEG analysis Gene enrichment Test for over-representation GO enrichment analysis

Installation

You can install sigident.func with the following commands in R:

install.packages("devtools")
devtools::install_github("miracum/clearly-sigident.func")

Example

Please study the package's vignette for a detailed example.

Since the building the package vignette takes rather long (~ 20 min.), we provide the already built vignettes in this repository.

Notice

The sigident.func package is under active development and not on CRAN yet - this means, that from time to time, the API can break, due to extending and modifying its functionality. It can also happen, that previoulsy included functions and/or function arguments are no longer supported. However, a detailed package vignette will be provided alongside with every major change in order to describe the currently supported workflow.