go_enrichment_analysis: go_enrichment_analysis

In miracum/clearly-sigident.func: Sigident Functional Analysis

go_enrichment_analysis

Description

Helper function to perform enrichment analysis

Usage

go_enrichment_analysis(
  gene,
  org_db,
  organism,
  fitlm,
  pathwayid,
  species,
  plotdir = NULL
)

Arguments

gene	A character vector containing the Entrez-IDs.
org_db	org_db
organism	A character string indicating the organism. Currently supported: "hsa".
fitlm	An MArrayLM object, returned by 'go_diff_reg()'.
pathwayid	KEGG pathway ID (like hsa04110 for cell cycle)
species	A character string indicating the sample's species. Currently supported: "Hs".
plotdir	A character string. Path to the folder to store resulting plots. Default: "./plots/".

miracum/clearly-sigident.func documentation built on June 28, 2022, 3:16 p.m.