export_deg_annotations: export_deg_annotations
In miracum/clearly-sigident.func: Sigident Functional Analysis
export_deg_annotations R Documentation
export_deg_annotations
Description
Helper function to export DEG annotations from mergedset.
Usage
export_deg_annotations(mergedset, genes, idtype)
Arguments
mergedset
A large Expression Set. The output of the function
'sigident.preproc::geo_merge'. Please note, that mergedset holds data,
which are not yet batch corrected.
genes
A object. The output of the function 'identify_degs()'.
idtype
A character string. The type of ID used to name the
genes. One of 'entrez' or 'affy' intended to use either entrez IDs or
affy IDs. Caution: when using entrez IDs, missing and duplicated IDs
are being removed!
See Also
sigident.preproc
miracum/clearly-sigident.func documentation built on June 28, 2022, 3:16 p.m.
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| export_deg_annotations | R Documentation |
export_deg_annotations
Description
Helper function to export DEG annotations from mergedset.
Usage
export_deg_annotations(mergedset, genes, idtype)
Arguments
mergedset |
A large Expression Set. The output of the function 'sigident.preproc::geo_merge'. Please note, that mergedset holds data, which are not yet batch corrected. |
genes |
A object. The output of the function 'identify_degs()'. |
idtype |
A character string. The type of ID used to name the genes. One of 'entrez' or 'affy' intended to use either entrez IDs or affy IDs. Caution: when using entrez IDs, missing and duplicated IDs are being removed! |
See Also
sigident.preproc
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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