go_diff_reg: go_diff_reg

In miracum/clearly-sigident.func: Sigident Functional Analysis

go_diff_reg

Description

Helper function to fitting linear models

Usage

go_diff_reg(mergeset, diagnosis, idtype, entrezids = NULL)

Arguments

mergeset	A matrix of merged expression sets (rows = genes, columns = samples). The output of the funtion 'sigident.preproc::load_geo_data()'.
diagnosis	A vector of integers, holding the binary outcome variable (0 = "Control", 1 = "Target").
idtype	A character string. The type of ID used to name the genes. One of 'entrez' or 'affy' intended to use either entrez IDs or affy IDs. Caution: when using entrez IDs, missing and duplicated IDs are being removed!
entrezids	A character vector, containing entrez IDs. To be used only if 'idtype'= "affy" (default = NULL).

miracum/clearly-sigident.func documentation built on June 28, 2022, 3:16 p.m.