identify_degs: identify_degs
In miracum/clearly-sigident.func: Sigident Functional Analysis
identify_degs R Documentation
identify_degs
Description
Helper function to identify DEGs based on the limma package
Usage
identify_degs(mergeset, diagnosis, q_value = 0.01)
Arguments
mergeset
A matrix of merged expression sets (rows = genes,
columns = samples). The output of the funtion
'sigident.preproc::load_geo_data()'.
diagnosis
A vector of integers, holding the binary outcome variable
(0 = "Control", 1 = "Target").
q_value
A numeric value for the q-value (false discovery rate)
(default=0.01).
miracum/clearly-sigident.func documentation built on June 28, 2022, 3:16 p.m.
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| identify_degs | R Documentation |
identify_degs
Description
Helper function to identify DEGs based on the limma package
Usage
identify_degs(mergeset, diagnosis, q_value = 0.01)
Arguments
mergeset |
A matrix of merged expression sets (rows = genes, columns = samples). The output of the funtion 'sigident.preproc::load_geo_data()'. |
diagnosis |
A vector of integers, holding the binary outcome variable (0 = "Control", 1 = "Target"). |
q_value |
A numeric value for the q-value (false discovery rate) (default=0.01). |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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