Files in mirnavazquez/RbiMs
R Tools for Reconstruncting Bin Metabolisms
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/CALC-calc_abundance.R
R/CALC-calc_binary.R
R/CALC-calc_percentage.R
R/COLAPSE-read_interpro_colapsed.R
R/GET-get_pca.R
R/GET-get_subset_pathway.R
R/GET-get_subset_pca.R
R/GET-get_subseting_pathway.R
R/GET-get_unique.R
R/MAPPING-mapping_ko.R
R/PLOT-bubble_dbcan.R
R/PLOT-bubble_domain.R
R/PLOT-bubble_ko.R
R/PLOT-heatmap_dbcan.R
R/PLOT-heatmap_domain.R
R/PLOT-heatmap_ko.R
R/PLOT-plot_bubble.R
R/PLOT-plot_heatmap.R
R/READ-read_dbCAN3.R
R/READ-read_interpro.R
R/READ-read_interpro_databases.R
R/READ-read_ko.R
R/READ-read_ko_shiny.R
R/READ-read_picrust2.R
R/SEPARATE-separate_kegg.R
R/WRITE-write_metabolism.R
R/data.R
R/utils-pipe.R
README.Rmd
README.md
RbiMs.Rproj
_pkgdown.yml
data/.DS_Store
data/Rbims.RData
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/Create_Interpro_profile.html
docs/articles/Create_Interpro_profile_files/header-attrs-2.9/header-attrs.js
docs/articles/Create_KEGG_profile.html
docs/articles/Create_KEGG_profile_files/header-attrs-2.9/header-attrs.js
docs/articles/Explore_InterProScan_profile.html
docs/articles/Explore_InterProScan_profile_files/figure-html/unnamed-chunk-14-1.png
docs/articles/Explore_InterProScan_profile_files/figure-html/unnamed-chunk-19-1.png
docs/articles/Explore_InterProScan_profile_files/figure-html/unnamed-chunk-19-2.png
docs/articles/Explore_InterProScan_profile_files/figure-html/unnamed-chunk-5-1.png
docs/articles/Explore_InterProScan_profile_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Explore_InterProScan_profile_files/figure-html/unnamed-chunk-7-1.png
docs/articles/Explore_InterProScan_profile_files/figure-html/unnamed-chunk-8-1.png
docs/articles/Explore_InterProScan_profile_files/header-attrs-2.9/header-attrs.js
docs/articles/Explore_KEGG_profile.html
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-11-1.png
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-15-1.png
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-15-2.png
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-19-1.png
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-19-2.png
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-20-1.png
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-20-2.png
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-21-1.png
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-21-2.png
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-22-1.png
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-22-2.png
docs/articles/Explore_KEGG_profile_files/figure-html/unnamed-chunk-9-1.png
docs/articles/Explore_KEGG_profile_files/header-attrs-2.9/header-attrs.js
docs/articles/Installation.html
docs/articles/Installation_files/header-attrs-2.9/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/calc_binary.html
docs/reference/calc_percentage.html
docs/reference/figures/Logo-rRbiMs.png
docs/reference/figures/rRbiMs-3.png
docs/reference/get_subset_pathway.html
docs/reference/get_subset_pca.html
docs/reference/get_subset_unique.html
docs/reference/index.html
docs/reference/interpro_INTERPRO_long.html
docs/reference/interpro_INTERPRO_profile.html
docs/reference/interpro_KEGG_long.html
docs/reference/interpro_map.html
docs/reference/interpro_pfam_long.html
docs/reference/interpro_pfam_profile.html
docs/reference/ko_bin_mapp.html
docs/reference/ko_bin_table.html
docs/reference/mapping_ko.html
docs/reference/metadata.html
docs/reference/pipe.html
docs/reference/plot_bubble-1.png
docs/reference/plot_bubble.html
docs/reference/plot_heatmap.html
docs/reference/rbims.html
docs/reference/read_interpro.html
docs/reference/read_ko.html
inst/.DS_Store
inst/Example_bubble.png
inst/Example_bubble_order.png
inst/WORDLIST
inst/example_heatmap.png
inst/extdata/.DS_Store
inst/extdata/Interpro_test.tsv
inst/extdata/KEGG_bins.txt
inst/extdata/metadata.xlsx
inst/extdata/pred_metagenome_unstrat.tsv
inst/extdata/test_data/104_overview.txt
inst/extdata/test_data/108_overview.txt
inst/rRbiMs-3.png
man/.DS_Store
man/calc_binary.Rd
man/calc_percentage.Rd
man/figures/Logo-rRbiMs.png
man/figures/rRbiMs-3.png
man/get_subset_pathway.Rd
man/get_subset_pca.Rd
man/get_subset_unique.Rd
man/interpro_INTERPRO_long.Rd
man/interpro_INTERPRO_profile.Rd
man/interpro_KEGG_long.Rd
man/interpro_map.Rd
man/interpro_pfam_long.Rd
man/interpro_pfam_profile.Rd
man/ko_bin_mapp.Rd
man/ko_bin_table.Rd
man/mapping_ko.Rd
man/metadata.Rd
man/pipe.Rd
man/plot_bubble.Rd
man/plot_heatmap.Rd
man/rRbiMs-3.png
man/rbims.Rd
man/read_dbcan3.Rd
man/read_interpro.Rd
man/read_ko.Rd
man/read_ko_shiny.Rd
man/read_picrust2.Rd
man/write_metabolism.Rd
tests/testthat.R
tests/testthat/test-plot-bubble.R
tests/testthat/test-read_interpro.R
vignettes/.DS_Store
vignettes/.gitignore
vignettes/Create_Interpro_profile.Rmd
vignettes/Create_KEGG_profile.Rmd
vignettes/Explore_InterProScan_profile.Rmd
vignettes/Explore_KEGG_profile.Rmd
vignettes/Installation.Rmd
vignettes/Interpro.tsv
vignettes/KEGG_mapped.tsv
