Man pages for mkapur/kaputils
Utilities for Stock Assessment Simulation and Data Analysis
| compareNA | compareNA |
| errorTables | errorTables parsing of input selectivity plots to show... |
| extractResults | extract_results 'extract_results' custom wrapper of to... |
| extractResults_grid | extractResults_grid 'extractResults_grid' custom wrapper for... |
| getF | getF Simple effort model from Carruthers et al. (2012) -... |
| getFrancisLen | getFrancisLen 'getFrancisLen' straight up copy-paste of... |
| getMVNhes | get_mvnhes Function to generate mvn from var and corr of log... |
| getSeasonFrate | getSeasonFrate splits up F rates generated by getF into... |
| getShape | getShape generate a beta random variable given a mean and sd.... |
| getSST | GetSST |
| getWCGOP_len | getWCGOP_len beta a function to transpose data from the WCGOP... |
| makeDecTable | makeDecTable |
| makeSeltxt | makeSeltxt |
| nestidx | Nested loop index 'nestidx' returns the index value for a... |
| plotCPUE_panel | plotCPUE_panel 'plotCPUE_panel' panel plot illustrating... |
| plotF | plotF 'plotF' plots vector of F_std from SS3 report file,... |
| plotInputSel | plotInputSel 'plotInputSel' parsing of input selectivity... |
| plotKobe | plotKobe terminal kobe plot for a singly model. check out... |
| plotKobe_compare | plotKobe_compare terminal kobe plot. check out FLR. |
| plotKobe_panel | plotKobe_panel 'plotKobe_panel' custom wrapper to loop... |
| plotMnwtMatrix | plotMnwtMatrix 'plotMnwtMatrix' make a colored matrix showing... |
| plotPacific | plotPacific A ggplot basemap that is Pacific-centered.... |
| plotSens_panel | plotSens_panel a four-panel transparency shade plot for... |
| reweight_discards | reweight_discards beta a function to re-weight observed... |
| rmd2rscript | Convert RMD to R SCRIPT. Will save a file same location with... |
| simpleIBM | simpleIBM generalized version of IBM used for Kapur et al.... |
| SS_autoForecast | SS_autoForecast |
| ss_compare | ss_compare custom wrapper to loop through nested... |
| SS_executivesummaryMK | A function to create a executive summary tables from an SS... |
| SS_readforecastMK | read Stock Synthesis forecast file into list object in R |
| SS_writeforecastMK | read Stock Synthesis forecast file into list object in R |
| theme_black | custom GGPLOT2 theme for insertion adapted from... |
| theme_mk | custom GGPLOT2 theme for insertion adapted from... |
