plotKobe: plotKobe terminal kobe plot for a singly model. check out...

In mkapur/kaputils: Utilities for Stock Assessment Simulation and Data Analysis

Description

plotKobe terminal kobe plot for a singly model. check out FLR.

Usage

plotKobe(
  summaryoutput,
  terminal_only = c(T, F)[1],
  terminal_year = 2015,
  axes.limits = c(2, 2),
  kobe.type = c(NA, "ISC")[1],
  b.name = NA,
  f.name = NA,
  saveplot = T,
  plotloc = NA,
  doDistrib = FALSE,
  doLegend = T
)

Arguments

terminal_only	Do you only want to show the final year or the whole timeseries?
terminal_year	Either a value or vector corresponding to the terminal year in each model.
axes.limits	x and y maximums for kobe plot, default to 2
kobe.type	if 'ISC', will have pale orange coloring in place of orange/yellow
b.name	the character column name of the biomass ref point; can rename to change y lab
f.name	the character column name of the fishing ref point
saveplot	logical, do you want to save the plot
plotloc	where to save plot
doLegend	logical. do you want to write a legend (not advised for huge rep sets)
rootdir	home directory
pattern	1st order directory character
subpattern	2nd order directory character

mkapur/kaputils documentation built on Nov. 14, 2021, 3:23 a.m.