makeSeltxt: makeSeltxt

In mkapur/kaputils: Utilities for Stock Assessment Simulation and Data Analysis

Description

makeSeltxt reshapes a dataframe with size-at-capture data into a selectivity text file suitable for SS3

Usage

makeSeltxt(
  size_csv,
  size_col = "Measured.Length..cm.",
  fishery_col = "Fishery",
  time_col = "Year",
  sex = F,
  sex_col = "Sex",
  sex_vals = c("F", "M"),
  lBins = seq(50, 250, 5)
)

Arguments

size_csv	csv with capture information; each row should be a fish, sex optional
size_col	character name of column with measurement information; will drop NA rows
fishery_col	character name of column with fishery names; used to form cuts
time_col	character name of column by which time should be grouped; currently only supports one value (e.g. 'year')
sex	logical. should we aggregate by sex? if so, the resultant text file will print females and males in that order
sex_col	character name of column with sexes
sex_vals	vector of sex designations, female then male
lBins	vector of bin breaks

mkapur/kaputils documentation built on Nov. 14, 2021, 3:23 a.m.