getMVNhes: get_mvnhes Function to generate mvn from var and corr of log...

Description Usage Arguments

View source: R/getMVNhes.R

Description

get_mvnhes Function to generate mvn from var and corr of log (F/Fmsy) and log(SSB/SSBmsy) extracted from the hessian. Author: Felipe Carvalho

Usage

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getMVNhes(
  data = out,
  pars = c("Bratio", "F"),
  yr = 2017,
  yr.cov = NULL,
  mc = 10000
)

Arguments

rootdir

home directory

mq_csv

optional; if you already generated a MQ csv using extractResults it will read from that, otherwise need pattern/subpattern

axes.limits

x and y maximums for kobe plot, default to 2

kobe.type

if 'ISC', will have pale orange coloring in place of orange/yellow

b.name

the character column name of the biomass ref point; can rename to change y lab

f.name

the character column name of the fishing ref point

pattern

1st order directory character

subpattern

2nd order directory character

saveplot

logical, do you want to save the plot

plotloc

where to save plot

doLegend

logical. do you want to write a legend (not advised for huge rep sets)


mkapur/kaputils documentation built on Nov. 14, 2021, 3:23 a.m.