simpleIBM generalized version of IBM used for Kapur et al. growth study (Submitted to Fisheries Research). Right now this has constant M, and is not set-up to intake fishing mortality (therefore there is no selectivity). The population is initialized at equilibrium.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | simpleIBM(
nboot = 50,
simu_year = 100,
burn_yr = 20,
Inst_M = 0.2,
L1 = 10,
a1 = 1,
L2 = 100,
a2 = 15,
VBGF_K = 0.25,
lw_a = 2e-04,
lw_b = 3,
r_mat = 0.1,
L50 = 44,
growth_lognormal_SD = 0.015,
steepBH = 0.9,
R0 = 10
)
|
nboot |
the number of unique simulations of length simu_year you'd like to generate |
simu_year |
number of years to conduct simulation |
Inst_M |
natural mortality (single value applied to all ages) |
L1 |
start length |
a1 |
start age |
L2 |
terminal length |
a2 |
terminal age |
VBGF_K |
K as in the von bertalanffy growth function |
lw_a |
coefficient of length-weight exponential equation |
lw_b |
exponent of length-weight exponential equation |
r_mat |
slope of maturity ogive |
L50 |
length at 50 maturity |
steepBH |
Beverton-holt steepness |
burn_year |
can be zero; number of year's youd like to remove from the beginning of the simulation |
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