simpleIBM: simpleIBM generalized version of IBM used for Kapur et al....

Description Usage Arguments

View source: R/simpleIBM.R

Description

simpleIBM generalized version of IBM used for Kapur et al. growth study (Submitted to Fisheries Research). Right now this has constant M, and is not set-up to intake fishing mortality (therefore there is no selectivity). The population is initialized at equilibrium.

Usage

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simpleIBM(
  nboot = 50,
  simu_year = 100,
  burn_yr = 20,
  Inst_M = 0.2,
  L1 = 10,
  a1 = 1,
  L2 = 100,
  a2 = 15,
  VBGF_K = 0.25,
  lw_a = 2e-04,
  lw_b = 3,
  r_mat = 0.1,
  L50 = 44,
  growth_lognormal_SD = 0.015,
  steepBH = 0.9,
  R0 = 10
)

Arguments

nboot

the number of unique simulations of length simu_year you'd like to generate

simu_year

number of years to conduct simulation

Inst_M

natural mortality (single value applied to all ages)

L1

start length

a1

start age

L2

terminal length

a2

terminal age

VBGF_K

K as in the von bertalanffy growth function

lw_a

coefficient of length-weight exponential equation

lw_b

exponent of length-weight exponential equation

r_mat

slope of maturity ogive

L50

length at 50 maturity

steepBH

Beverton-holt steepness

burn_year

can be zero; number of year's youd like to remove from the beginning of the simulation


mkapur/kaputils documentation built on Nov. 14, 2021, 3:23 a.m.