ss_compare: ss_compare custom wrapper to loop through nested...

In mkapur/kaputils: Utilities for Stock Assessment Simulation and Data Analysis

Description

ss_compare custom wrapper to loop through nested operating/estimation models and plot using r4ss

Usage

ss_compare(
  rootdir,
  subplots = 1:20,
  plotloc = NA,
  pattern = "Rep",
  llabels = c(paste0("OMR", 1:2), paste0("EMR", 1:2)),
  likeCSV = T,
  likeLabel = c("Surv_like", "SizeFreq_like:_2"),
  lambdaLabel = c("Surv_lambda", "SizeFreq_lambda:_2"),
  fishery = "Deep7",
  fleetIdx = c(2, 3),
  dolegend = T
)

Arguments

rootdir	master location of all models and (optional) replicates; will search for Report.sso files therein
pattern	a string which identifies the first-order folders, e.g "EM" "OM" – applicable to grep().
llabels	logical. If T, will write a CSV with results.
subpattern	can be NA; a secondary string by which models will be grouped, e.g. "Replicate"

mkapur/kaputils documentation built on Nov. 14, 2021, 3:23 a.m.