Man pages for mkapur/kaputils
Utilities for Stock Assessment Simulation and Data Analysis

compareNAcompareNA
errorTableserrorTables parsing of input selectivity plots to show...
extractResultsextract_results 'extract_results' custom wrapper of to...
extractResults_gridextractResults_grid 'extractResults_grid' custom wrapper for...
getFgetF Simple effort model from Carruthers et al. (2012) -...
getFrancisLengetFrancisLen 'getFrancisLen' straight up copy-paste of...
getMVNhesget_mvnhes Function to generate mvn from var and corr of log...
getSeasonFrategetSeasonFrate splits up F rates generated by getF into...
getShapegetShape generate a beta random variable given a mean and sd....
getSSTGetSST
getWCGOP_lengetWCGOP_len beta a function to transpose data from the WCGOP...
makeDecTablemakeDecTable
makeSeltxtmakeSeltxt
nestidxNested loop index 'nestidx' returns the index value for a...
plotCPUE_panelplotCPUE_panel 'plotCPUE_panel' panel plot illustrating...
plotFplotF 'plotF' plots vector of F_std from SS3 report file,...
plotInputSelplotInputSel 'plotInputSel' parsing of input selectivity...
plotKobeplotKobe terminal kobe plot for a singly model. check out...
plotKobe_compareplotKobe_compare terminal kobe plot. check out FLR.
plotKobe_panelplotKobe_panel 'plotKobe_panel' custom wrapper to loop...
plotMnwtMatrixplotMnwtMatrix 'plotMnwtMatrix' make a colored matrix showing...
plotPacificplotPacific A ggplot basemap that is Pacific-centered....
plotSens_panelplotSens_panel a four-panel transparency shade plot for...
plotSRR_panelplotSRR
reweight_discardsreweight_discards beta a function to re-weight observed...
rmd2rscriptConvert RMD to R SCRIPT. Will save a file same location with...
simpleIBMsimpleIBM generalized version of IBM used for Kapur et al....
SS_autoForecastSS_autoForecast
ss_comparess_compare custom wrapper to loop through nested...
SS_executivesummaryMKA function to create a executive summary tables from an SS...
SS_readforecastMKread Stock Synthesis forecast file into list object in R
SS_writeforecastMKread Stock Synthesis forecast file into list object in R
theme_blackcustom GGPLOT2 theme for insertion adapted from...
theme_mkcustom GGPLOT2 theme for insertion adapted from...
mkapur/kaputils documentation built on Oct. 26, 2019, 11:49 a.m.