Man pages for mknoll/cmoRe
Analysis of CellProfiler acquired data for disease profiling and drug discovery.
| addCutoffs | Adds separately calculated cutoff data |
| addCutoffVars | Add cutoff variables |
| addVars | Create Ratio/Diff Vars |
| agg | Aggregate data |
| aggregateByWell | Aggregate data per well |
| analysisCCFractions | Analysis of cell cycle fractions |
| analyze | Analyze data |
| analyzeCC | Analyze Cell-Cycle results |
| analyzeNLME | Analyze data |
| analyzeTAVI | Analyze TAVI data |
| assignCellCycle | Assigns Cell-Cycle Status to each cell |
| assignCellCycleSimple | Assigns Cell-Cycle Status to each cell |
| assignCutoff | Assigns Cutoff result to each cell |
| assignCutoffSimple | assign cutoffs imple |
| assignFibroblast | Assigns Fibroblast status to each cell |
| assignFibroSimple | Assigns Cell-Cycle Status to each cell |
| assignNcFilterRes | Assign ncAreaFilter Results |
| assignNcFilterResSimple | Assigns Cell-Cycle Status to each cell |
| calc | Determine Cell Cycle, filter for Cell/Nucleus ratio and... |
| calcCutoffs | Calculate cutoffs for filters |
| calcFract | Calculate fractions (cellcycle) |
| calculateSyntheticVars | Calculate Synthetic Variables |
| cellCycleFractIntegrDNAInt | Derive cell cycle fractions from nuclear DNA intensity... |
| checkFilter | Check and filter treatments |
| classAssignment | Class assignment |
| corBetweenRep | correlation between replicates |
| createAdditionalVars | creation of new variables (ratios or differences) |
| drawRadarplots | Draw Radarplots |
| filter | Filter cell measurments |
| findClusters | Find clusters |
| flatten | Flatten cutoffs |
| fractAgg | fraction quantification |
| getData | Load experiment data from |
| getLog | Get Log |
| getNRows | Get number of rows from file |
| getResiduals | Get Residuals |
| imageExp-class | An S4 class representing a single experiment |
| imputeMC | Impute missing cutoffs |
| initialize-imageExp-method | Constructor imageExp |
| intersectLmeCor | A Intersect lme/cor results |
| intersectLmeCorDynamic | Int Cor dyn |
| linearDecomp | Linear Decomposition |
| lmeKoVsTreatment | LME Kontrolle vs Treatment |
| medianAgg | median aggregation |
| ncAreaFilter | Nucl/Cell Ratio Filter |
| plotClusters | Plot clusters |
| plotCorrelationMatrix | Plot correlation matrix |
| plotVerlauf | Plotte Verlaufskurve |
| qc | Create QC plots |
| qcPlots | QC Plots |
| readData | Read data |
| readSingleCol | Read CP file single column |
| removeRawData | Remove raw data |
| sumAgg | sum aggregation to calculate fraction |
| transformVars | Create transformed vars |
| zTrans | Z-Transform data |
| zTransform | Z-Transform data |
