calc: Determine Cell Cycle, filter for Cell/Nucleus ratio and...

In mknoll/cmoRe: Analysis of CellProfiler acquired data for disease profiling and drug discovery.

Determine Cell Cycle, filter for Cell/Nucleus ratio and fibroblasts

Description

Calculates derived variables

Usage

calc(
  obj,
  fun = NULL,
  varFB = "Intensity_MedianIntensity_DNA.nucl",
  varCC = "Intensity_IntegratedIntensity_DNA.nucl",
  xMinGlobMaxFB = 0.2,
  xMaxGlobMaxFB = 0.6,
  ...
)

Arguments

obj	imgExp instance
fun	function to calculate, can be cc (cell cycle) or nc (nucler/cell ratio) or fb (gibrobaslten). defaults to NULL (all calculations are performed)

mknoll/cmoRe documentation built on Nov. 18, 2022, 4:01 p.m.