imageExp-class: An S4 class representing a single experiment

In mknoll/cmoRe: Analysis of CellProfiler acquired data for disease profiling and drug discovery.

An S4 class representing a single experiment

Description

An S4 class representing a single experiment

Slots

expID

Experiment ID

experiment

list, each element corresponds to a single run; each run contains 1 to n folders as list

data

data.frame containing the sinlge measurements; altered during filtering steps

dataCC

result of the cellCycleFractIntegrDNAInt() function, which determines the cell cycle

dataNC

result of the ncAreaFilter() function, used to filter cells by cell/nuleus area ratio

dataFB

result of the cellCycleFractIntegrDNAInt(), used to filter fibroblasts

dataCutoff

TODO

dataAgg

per well aggregated data

ddataZ

z-transformed dataAgg data

log

event-log of the different processing steps

mknoll/cmoRe documentation built on Nov. 18, 2022, 4:01 p.m.