qc: Create QC plots

In mknoll/cmoRe: Analysis of CellProfiler acquired data for disease profiling and drug discovery.

Create QC plots

Description

Creates QC plots

Usage

qc(
  data,
  folder = NULL,
  file = NULL,
  uid = NULL,
  vars = "nCells",
  fun = NULL,
  na.rm = T
)

Arguments

data	data.frame containing the cell profiler data to check. Expects the columns TREATMENT, PLATTE, VERSUCH, Metadata_Well
file	pdf filenamename to store the analysis at
vars	Variables to analyze, defaults to nCells (number of cells)
fun	Function to obtain aggregated values per well, e.g. median
na.rm	delete na in fun

mknoll/cmoRe documentation built on Nov. 18, 2022, 4:01 p.m.