Man pages for mojaveazure/seurat-disk
Interfaces for HDF5-Based Single Cell File Formats
| AppendData | Append data from an h5Seurat file to a preexisting 'Seurat'... |
| AssembleObject | Assemble an object from an h5Seurat file |
| BasicWrite | Write lists and other data to an HDF5 dataset |
| BoolToInt | Convert a logical to an integer |
| CheckMatrix | Check that a dataset is a proper loom matrix |
| ChunkPoints | Generate chunk points |
| ClosestVersion | Find the closest version |
| CompoundToGroup | Convert an HDF5 compound dataset to a group |
| Connect | Connect to a single-cell HDF5 dataset |
| Convert | Convert an on-disk single-cell dataset to another format |
| Dims | Get the dimensions of an HDF5 dataset or sparse matrix |
| FileType | Determine a filetype based on its extension |
| FixFeatures | Fix Feature Names |
| GetClass | Get a class string with package information |
| GetMargin | Determine the margin to use for a dataset |
| GetObject | Figure out which objects to load from an h5Seurat file |
| GetParent | Get the parent of an HDF5 dataset or group |
| GuessDType | Guess an HDF5 Datatype |
| H5ADToH5Seurat | Convert AnnData/H5AD files to h5Seurat files |
| H5Exists | Check to see if a dataset, group, or attribute exists in an... |
| H5Path | Create an HDF5 object path |
| h5Seurat-bindings | Seurat bindings for h5Seurat files |
| h5Seurat-class | A class for connections to h5Seurat files |
| H5SeuratToH5AD | Convert h5Seurat files to H5AD files |
| h5SI | Tools for handling h5Seurat indexes |
| ImageWrite | Write a SpatialImage object to an HDF5 dataset |
| IsDType | Check the datatype of an HDF5 dataset |
| IsMatrixEmpty | Check to see if a matrix is empty |
| IsSCDisk | Does an R6 class inherit from scdisk |
| LoadH5Seurat | Load a saved 'Seurat' object from an h5Seurat file |
| LoadLoom | Loom-file Loading |
| loom-bindings | Seurat binding for loom files |
| loom-class | A class for connections to loom files |
| LoomLoading | Loom-file Loading |
| MakeSpace | Make a space |
| PadMatrix | Pad a matrix |
| PadNames | Add names for unnamed or partially named objects |
| PB | Create a progress bar |
| RandomName | Generate a random string of characters |
| ReadH5 | Load data from an HDF5 File |
| RegisterSCDisk | Get and Register 'scdisk' Subclasses |
| SaveH5Seurat | Save a 'Seurat' object to an h5Seurat file |
| SaveLoom | Save a 'Seurat' object to a loom file |
| Scalar | Create a scalar space |
| scdisk-class | A disk-based object for single-cell analysis |
| SeuratDisk-package | SeuratDisk: Interfaces for HDF5-Based Single Cell File... |
| SparsePointers | Convert sparse matrix pointers to indices and vice versa |
| SparseWrite | Write a sparse matrix to an HDF5 dataset |
| StringType | Generate an HDF5 string dtype |
| TestH5 | Test HDF5 datasets and groups to see what kind of data they... |
| TestObject | Test an object's class |
| Timestamp | Create and work with timestamps |
| Transpose | Transpose a matrix |
| UpdateKey | Update a Seurat key |
| UpdateSlots | Update slots in an object |
| ValidateLoom | Validate Loom Files |
| Writeable | Is an HDF5 file or group writeable |
| WriteAttribute | Write an attribute to an HDF5 file, group, or dataset |
| WriteH5Group | Write data to an HDF5 group |
| WriteMode | Get the proper HDF5 connection mode for writing depending on... |
