API for mojaveazure/seurat-disk
Interfaces for HDF5-Based Single Cell File Formats
| Global functions | |
|---|---|
| .onLoad | Source code |
| AppendData | Man page Source code |
| AppendData.H5File | Man page Source code |
| AppendData.character | Man page Source code |
| AppendData.h5Seurat | Man page Source code |
| AssembleAssay | Man page Source code |
| AssembleDimReduc | Man page Source code |
| AssembleGraph | Man page Source code |
| AssembleImage | Man page Source code |
| AssembleNeighbor | Man page Source code |
| AssembleObject | Man page |
| AssembleSeuratCommand | Man page Source code |
| AttrExists | Man page Source code |
| BasicWrite | Man page Source code |
| BoolToInt | Man page Source code |
| Cells | Man page |
| Cells.h5Seurat | Man page Source code |
| CheckMatrix | Man page Source code |
| ChunkPoints | Man page Source code |
| ClosestVersion | Man page Source code |
| CompoundToGroup | Man page Source code |
| Connect | Man page Source code |
| Convert | Man page Source code |
| Convert.H5File | Man page Source code |
| Convert.character | Man page Source code |
| Convert.h5Seurat | Man page Source code |
| DefaultAssay | Man page Man page |
| DefaultAssay.h5SI | Man page Source code |
| DefaultAssay.h5Seurat | Man page Source code |
| DefaultAssay.loom | Man page Source code |
| DefaultAssay<-.h5Seurat | Man page |
| Dims | Man page Source code |
| Dims.H5D | Source code |
| Dims.H5Group | Source code |
| Exists | Man page Source code |
| FileType | Man page Source code |
| FixFeatures | Man page Source code |
| FormatTime | Man page Source code |
| GetAssays | Man page Source code |
| GetClass | Man page Source code |
| GetCommands | Man page Source code |
| GetDimReducs | Man page Source code |
| GetGraphs | Man page Source code |
| GetImages | Man page Source code |
| GetMargin | Man page Source code |
| GetNeighbors | Man page Source code |
| GetObject | Man page |
| GetParent | Man page Source code |
| GetSCDisk | Man page Source code |
| GuessDType | Man page Source code |
| H5ADToH5Seurat | Man page Source code |
| H5Exists | Man page |
| H5Path | Man page Source code |
| H5SeuratToH5AD | Man page Source code |
| Idents | Man page |
| Idents.h5Seurat | Man page Source code |
| ImageWrite | Man page Source code |
| IndexToPointer | Man page Source code |
| IsDType | Man page Source code |
| IsDataFrame | Man page |
| IsDataFrame,H5D-method | Man page |
| IsDataFrame,H5Group-method | Man page |
| IsFactor | Man page |
| IsFactor,H5D-method | Man page |
| IsFactor,H5Group-method | Man page |
| IsGlobal | Man page |
| IsGlobal.H5Group | Man page Source code |
| IsList | Man page |
| IsList,H5Group-method | Man page |
| IsLogical | Man page |
| IsLogical,H5D-method | Man page |
| IsMatrix | Man page |
| IsMatrix,H5D-method | Man page |
| IsMatrix,H5Group-method | Man page |
| IsMatrixEmpty | Man page Source code |
| IsSCDisk | Man page Source code |
| Key | Man page |
| Key.H5Group | Man page Source code |
| LoadGraph | Source code |
| LoadH5Seurat | Man page Source code |
| LoadH5Seurat.H5File | Man page Source code |
| LoadH5Seurat.character | Man page Source code |
| LoadH5Seurat.h5Seurat | Man page Source code |
| LoadLoom | Man page Source code |
| LoadLoom.H5File | Man page Source code |
| LoadLoom.character | Man page Source code |
| LoadLoom.loom | Man page Source code |
| LoadLoom0.1 | Man page Source code |
| LoadLoom3.0 | Man page Source code |
| LoomLoading | Man page |
| LoomValidate0.1 | Man page Source code |
| LoomValidate3.0.0 | Man page Source code |
| MakeSpace | Man page Source code |
| PB | Man page Source code |
| PadMatrix | Man page |
| PadMatrix,H5D-method | Man page |
| PadMatrix,H5Group-method | Man page |
| PadNames | Man page Source code |
| PointerToIndex | Man page Source code |
| Project | Man page |
| Project.h5Seurat | Man page Source code |
| Project<-.h5Seurat | Man page |
| RandomName | Man page Source code |
| ReadH5 | Man page |
| RegisterSCDisk | Man page Source code |
| SaveH5Seurat | Man page Source code |
| SaveH5Seurat.Seurat | Man page Source code |
| SaveH5Seurat.default | Man page Source code |
| SaveLoom | Man page Source code |
| SaveLoom.Seurat | Man page Source code |
| SaveLoom.default | Man page Source code |
| Scalar | Man page Source code |
| SeuratDisk | Man page |
| SeuratDisk-package | Man page |
| SparsePointers | Man page |
| SparseWrite | Man page Source code |
| Stdev.h5Seurat | Man page Source code |
| StringType | Man page Source code |
| TSFormats | Man page Source code |
| TestH5 | Man page |
| TestObject | Man page |
| Timestamp | Man page Source code |
| Transpose | Man page Source code |
| Transpose.H5D | Man page Source code |
| Transpose.H5Group | Man page Source code |
| Transpose.dgCMatrix | Man page Source code |
| UpdateKey | Man page Source code |
| UpdateSlots | Man page Source code |
| ValiateLoom | Man page |
| ValidateLoom | Man page |
| WriteAttribute | Man page Source code |
| WriteH5Group | Man page |
| WriteH5Group,ANY-method | Man page |
| WriteH5Group,Assay-method | Man page |
| WriteH5Group,DimReduc-method | Man page |
| WriteH5Group,Graph-method | Man page |
| WriteH5Group,Neighbor-method | Man page |
| WriteH5Group,SeuratCommand-method | Man page |
| WriteH5Group,array-method | Man page |
| WriteH5Group,data.frame-method | Man page |
| WriteH5Group,dgCMatrix-method | Man page |
| WriteH5Group,factor-method | Man page |
| WriteH5Group,list-method | Man page |
| WriteH5Group,logical-method | Man page |
| WriteMode | Man page Source code |
| Writeable | Man page Source code |
| _PACKAGE | Man page |
| as.Seurat | Man page Man page |
| as.Seurat.h5Seurat | Man page Source code |
| as.Seurat.loom | Man page Source code |
| as.array | Man page |
| as.array.H5D | Man page Source code |
| as.data.frame | Man page |
| as.data.frame.H5D | Man page Source code |
| as.data.frame.H5Group | Man page Source code |
| as.factor | Man page |
| as.factor,H5Group-method | Man page |
| as.h5Seurat | Man page Source code |
| as.h5Seurat.H5File | Man page Source code |
| as.h5Seurat.Seurat | Man page Source code |
| as.h5Seurat.default | Man page Source code |
| as.list | Man page |
| as.list,H5Group-method | Man page |
| as.logical | Man page |
| as.logical.H5D | Man page Source code |
| as.loom | Man page Source code |
| as.loom.H5File | Man page Source code |
| as.loom.Seurat | Man page Source code |
| as.loom.default | Man page Source code |
| as.matrix | Man page |
| as.matrix.H5D | Man page Source code |
| as.matrix.H5Group | Man page Source code |
| as.sparse | Man page |
| as.sparse.H5D | Man page Source code |
| as.sparse.H5Group | Man page Source code |
| dim | Man page |
| dim.loom | Man page Source code |
| dimnames | Man page |
| dimnames.H5D | Man page Source code |
| h5SI | Man page |
| h5Seurat | Man page |
| h5Seurat-bindings | Man page |
| h5Seurat-class | Man page |
| loom | Man page |
| loom-bindings | Man page |
| loom-class | Man page |
| print.h5SI | Man page Source code |
| readH5AD_obs | Source code |
| readH5AD_obsm | Source code |
| scdisk | Man page |
| scdisk-class | Man page |
