SaveLoom: Save a 'Seurat' object to a loom file

In mojaveazure/seurat-disk: Interfaces for HDF5-Based Single Cell File Formats

Save a Seurat object to a loom file

Description

Save a Seurat object to a loom file

Usage

SaveLoom(object, filename, overwrite = FALSE, verbose = TRUE, ...)

as.loom(x, ...)

## Default S3 method:
SaveLoom(object, filename, overwrite = FALSE, verbose = TRUE, ...)

## S3 method for class 'Seurat'
SaveLoom(
  object,
  filename = paste0(Project(object = object), ".loom"),
  overwrite = FALSE,
  verbose = TRUE,
  ...
)

## Default S3 method:
as.loom(x, filename, overwrite = FALSE, verbose = TRUE)

## S3 method for class 'H5File'
as.loom(x, ...)

## S3 method for class 'Seurat'
as.loom(
  x,
  filename = paste0(Project(object = x), ".loom"),
  overwrite = FALSE,
  verbose = TRUE,
  ...
)

Arguments

object, x	An object
filename	Name of file to save the object to
overwrite	Overwrite filename if present
verbose	Show progress updates
...	Arguments passed to other methods

Value

SaveLoom: Invisibly returns filename

as.loom: A loom object

mojaveazure/seurat-disk documentation built on Nov. 5, 2023, 9:40 a.m.