h5Seurat-class: A class for connections to h5Seurat files

In mojaveazure/seurat-disk: Interfaces for HDF5-Based Single Cell File Formats

A class for connections to h5Seurat files

Description

A class for connections to h5Seurat files

A class for connections to h5Seurat files

Format

An R6Class object

Super classes

hdf5r::H5RefClass -> hdf5r::H5File -> SeuratDisk::scdisk -> h5Seurat

Methods

Public methods

• h5Seurat$index()

• h5Seurat$set.version()

• h5Seurat$version()

Inherited methods

• hdf5r::H5RefClass$close()
• hdf5r::H5RefClass$dec_ref()
• hdf5r::H5RefClass$get_file_id()
• hdf5r::H5RefClass$get_obj_type()
• hdf5r::H5RefClass$get_ref()
• hdf5r::H5RefClass$inc_ref()
• hdf5r::H5RefClass$methods()
• hdf5r::H5File$attr_delete()
• hdf5r::H5File$attr_delete_by_idx()
• hdf5r::H5File$attr_delete_by_name()
• hdf5r::H5File$attr_exists()
• hdf5r::H5File$attr_exists_by_name()
• hdf5r::H5File$attr_get_number()
• hdf5r::H5File$attr_info_by_idx()
• hdf5r::H5File$attr_info_by_name()
• hdf5r::H5File$attr_name_by_idx()
• hdf5r::H5File$attr_open()
• hdf5r::H5File$attr_open_by_idx()
• hdf5r::H5File$attr_open_by_name()
• hdf5r::H5File$attr_rename()
• hdf5r::H5File$attr_rename_by_name()
• hdf5r::H5File$close_all()
• hdf5r::H5File$commit()
• hdf5r::H5File$create_attr()
• hdf5r::H5File$create_attr_by_name()
• hdf5r::H5File$create_dataset()
• hdf5r::H5File$create_group()
• hdf5r::H5File$create_reference()
• hdf5r::H5File$exists()
• hdf5r::H5File$file_info()
• hdf5r::H5File$flush()
• hdf5r::H5File$get_filename()
• hdf5r::H5File$get_filesize()
• hdf5r::H5File$get_intent()
• hdf5r::H5File$get_obj_count()
• hdf5r::H5File$get_obj_ids()
• hdf5r::H5File$get_obj_name()
• hdf5r::H5File$group_info()
• hdf5r::H5File$group_info_by_idx()
• hdf5r::H5File$group_info_by_name()
• hdf5r::H5File$link()
• hdf5r::H5File$link_copy_from()
• hdf5r::H5File$link_copy_to()
• hdf5r::H5File$link_create_external()
• hdf5r::H5File$link_create_hard()
• hdf5r::H5File$link_create_soft()
• hdf5r::H5File$link_delete()
• hdf5r::H5File$link_delete_by_idx()
• hdf5r::H5File$link_exists()
• hdf5r::H5File$link_info()
• hdf5r::H5File$link_info_by_idx()
• hdf5r::H5File$link_move_from()
• hdf5r::H5File$link_move_to()
• hdf5r::H5File$link_name_by_idx()
• hdf5r::H5File$link_value()
• hdf5r::H5File$link_value_by_idx()
• hdf5r::H5File$ls()
• hdf5r::H5File$mount()
• hdf5r::H5File$obj_copy_from()
• hdf5r::H5File$obj_copy_to()
• hdf5r::H5File$obj_info()
• hdf5r::H5File$obj_info_by_idx()
• hdf5r::H5File$obj_info_by_name()
• hdf5r::H5File$open()
• hdf5r::H5File$open_by_idx()
• hdf5r::H5File$path_valid()
• hdf5r::H5File$print()
• hdf5r::H5File$unmount()
• SeuratDisk::scdisk$chunk.points()
• SeuratDisk::scdisk$finalizer()
• SeuratDisk::scdisk$initialize()
• SeuratDisk::scdisk$last.modified()
• SeuratDisk::scdisk$timestamp()

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Method index()

Get the index for this h5Seurat file

Usage

h5Seurat$index()

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Method set.version()

Set the version attribute

Usage

h5Seurat$set.version(version)

Arguments

version

A version number matching the regex ^\d+(\.\d+){2}(\.9\d{3})?$

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Method version()

Get the version attribute

Usage

h5Seurat$version()

See Also

H5File

mojaveazure/seurat-disk documentation built on Nov. 5, 2023, 9:40 a.m.