SaveH5Seurat: Save a 'Seurat' object to an h5Seurat file

In mojaveazure/seurat-disk: Interfaces for HDF5-Based Single Cell File Formats

Save a Seurat object to an h5Seurat file

Description

Save a Seurat object to an h5Seurat file

Usage

SaveH5Seurat(object, filename, overwrite = FALSE, verbose = TRUE, ...)

as.h5Seurat(x, ...)

## Default S3 method:
SaveH5Seurat(object, filename, overwrite = FALSE, verbose = TRUE, ...)

## S3 method for class 'Seurat'
SaveH5Seurat(
  object,
  filename = paste0(Project(object = object), ".h5Seurat"),
  overwrite = FALSE,
  verbose = TRUE,
  ...
)

## Default S3 method:
as.h5Seurat(x, filename, overwrite = FALSE, verbose = TRUE, ...)

## S3 method for class 'H5File'
as.h5Seurat(x, ...)

## S3 method for class 'Seurat'
as.h5Seurat(
  x,
  filename = paste0(Project(object = x), ".h5seurat"),
  overwrite = FALSE,
  verbose = TRUE,
  ...
)

Arguments

object, x	An object
filename	Name of file to save the object to
overwrite	Overwrite filename if present
verbose	Show progress updates
...	Arguments passed to other methods

Value

SaveH5Seurat: Invisbly returns filename

as.h5Seurat: An h5Seurat object

mojaveazure/seurat-disk documentation built on Nov. 5, 2023, 9:40 a.m.