AppendData: Append data from an h5Seurat file to a preexisting 'Seurat'...

In mojaveazure/seurat-disk: Interfaces for HDF5-Based Single Cell File Formats

Append data from an h5Seurat file to a preexisting Seurat object

Description

Append data from an h5Seurat file to a preexisting Seurat object

Usage

AppendData(
  file,
  object,
  assays = NULL,
  reductions = NULL,
  graphs = NULL,
  images = NULL,
  extras = "commands",
  overwrite = FALSE,
  verbose = TRUE,
  ...
)

## S3 method for class 'character'
AppendData(
  file,
  object,
  assays = NULL,
  reductions = NULL,
  graphs = NULL,
  images = NULL,
  extras = "commands",
  overwrite = FALSE,
  verbose = TRUE,
  ...
)

## S3 method for class 'H5File'
AppendData(
  file,
  object,
  assays = NULL,
  reductions = NULL,
  graphs = NULL,
  images = NULL,
  extras = "commands",
  overwrite = FALSE,
  verbose = TRUE,
  ...
)

## S3 method for class 'h5Seurat'
AppendData(
  file,
  object,
  assays = NULL,
  reductions = NULL,
  graphs = NULL,
  images = NULL,
  extras = "commands",
  overwrite = FALSE,
  verbose = TRUE,
  ...
)

Arguments

object	A Seurat object to append data to
assays	One of: A character vector with names of assays A character vector with one or more of counts, data, scale.data describing which slots of all assays to load A named list where each entry is either the name of an assay or a vector describing which slots (described above) to take from which assay NULL for all assays FALSE for no assays
reductions	One of: A character vector with names of reductions NULL for all reductions NA for global reductions FALSE for no reductions Note: Only reductions associated with an assay loaded in assays or marked as global will be loaded
graphs	One of: A character vector with names of graphs NULL for all graphs FALSE for no graphs Note: Only graphs associated with an assay loaded in assays will be loaded
images	One of: A character vector with names of images NULL for all images NA for global images FALSE for no images
extras	Extra information to load; supports any combination of the following values: “commands” Load command logs. If overwrite = TRUE, replaces existing command logs
overwrite	Overwrite existing data in object with data from file
verbose	Show progress updates
...	Arguments passed to other methods

Value

object with the extra data requested

mojaveazure/seurat-disk documentation built on Nov. 5, 2023, 9:40 a.m.