write_interaction_score_input: Write edge lists and combined graphs to files

In molnet-org/molnet: Predicting Differential Drug Response using Multi-Omics Networks

Description

(INTERNAL) Writes the combined graphs and the drug target edge lists to files for passing them to the python interaction score script. Graphs are saved as 'gml' file. Edgelists are saved as 'tsv' file.

Usage

write_interaction_score_input(
  combined_graphs,
  drug_target_edgelists,
  saving_path
)

Arguments

combined_graphs	A named list (elements 'group1' and 'group2'). Each element contains the entire combined network (layers + inter-layer connections) as iGraph graph object.
drug_target_edgelists	A named list (elements 'group1' and 'group2'). Each element contains the list of edges to be considered in the interaction score calculation as data frame (columns 'from', 'to' and 'weight')
saving_path	Directory to write to

molnet-org/molnet documentation built on Dec. 21, 2021, 8:59 p.m.