Files in montilab/K2Taxonomer

Creating annotated submodules of high-throughput data through recursive partitioning

R/AllClasses.R R/AllGenerics.R R/K2dashboard.R R/K2dendro.R R/K2preproc.R R/K2tax.R R/K2visNetwork.R R/aggregateGSVAscores.R R/cKmeansWrapper.R R/cKmeansWrapperSubsample.R R/checkK2.R R/data.R R/dgeWrapper.R R/doSplit.R R/fixFDR.R R/formatCov.R R/getDGETable.R R/getEnrichmentTable.R R/getGenePathways.R R/getTestsModTable.R R/hclustWrapper.R R/isK2.R R/runDGEmods.R R/runDSSEmods.R R/runFisher1sided.R R/runFisher2sided.R R/runGSEmods.R R/runGSVAmods.R R/runK2Taxonomer.R R/runTestsMods.R R/runTtest.R R/runWilcox.R R/signatureWrapper.R README.md inst/dashboard/DashHelper.R inst/dashboard/K2Dashboard.Rmd inst/dashboard/about.md inst/unitTests/test_functions.R man/K2-class.Rd man/K2dashboard.Rd man/K2data.Rd man/K2dendro.Rd man/K2eSet.Rd man/K2gSet.Rd man/K2gene2Pathway.Rd man/K2geneURL.Rd man/K2genesetURL.Rd man/K2genesets.Rd man/K2info.Rd man/K2meta.Rd man/K2preproc.Rd man/K2res.Rd man/K2results.Rd man/K2tax.Rd man/K2visNetwork.Rd man/aggregateGSVAscores.Rd man/cKmeansWrapper.Rd man/cKmeansWrapperSubsample.Rd man/getDGETable.Rd man/getEnrichmentTable.Rd man/getGenePathways.Rd man/getTestsModTable.Rd man/hclustWrapper.Rd man/runDGEmods.Rd man/runDSSEmods.Rd man/runGSEmods.Rd man/runGSVAmods.Rd man/runK2Taxonomer.Rd man/runTestsMods.Rd tests/runTests.R vignettes/K2Taxonomer_dashboard.Rmd vignettes/K2Taxonomer_dashhelp.Rmd vignettes/K2Taxonomer_singlecell.Rmd vignettes/RunningK2Taxonomer.Rmd