dot-dots_plot: Plot top enriched genesets

.dots_plotR Documentation

Plot top enriched genesets

Description

Plot top enriched genesets

Usage

.dots_plot(
  hyp_df,
  top = 20,
  abrv = 50,
  size_by = c("genesets", "significance", "none"),
  pval_cutoff = 1,
  fdr_cutoff = 1,
  val = c("fdr", "pval"),
  title = ""
)

Arguments

hyp_df

A dataframe from a hyp object

top

Limit number of genesets shown

abrv

Abbreviation length of genesetlabels

size_by

Size dots by e.g. c("genesets", "significance", "none")

pval_cutoff

Filter results to be less than pval cutoff

fdr_cutoff

Filter results to be less than fdr cutoff

val

Choose significance value e.g. c("fdr", "pval")

title

Plot title

Value

A ggplot object


montilab/hypeR documentation built on Oct. 29, 2023, 12:01 p.m.