msigdb_gsets: Download data from msigdb in the form of a gsets object
In montilab/hypeR: An R Package For Geneset Enrichment Workflows
msigdb_gsets R Documentation
Download data from msigdb in the form of a gsets object
Description
Download data from msigdb in the form of a gsets object
Usage
msigdb_gsets(species, category, subcategory = "", clean = FALSE)
Arguments
species
A species to determine gene symbols (refer to ?msigdbr::msigdbr for avilable species)
category
Geneset category (refer to ?msigdbr::msigdbr for avilable categories)
subcategory
Geneset subcategory (refer to ?msigdbr::msigdbr for avilable subcategories)
clean
Use true to clean labels of genesets
Value
A gsets object
Examples
HALLMARK <- msigdb_gsets("Homo sapiens", "H", "")
montilab/hypeR documentation built on Oct. 29, 2023, 12:01 p.m.
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| msigdb_gsets | R Documentation |
Download data from msigdb in the form of a gsets object
Description
Download data from msigdb in the form of a gsets object
Usage
msigdb_gsets(species, category, subcategory = "", clean = FALSE)
Arguments
species |
A species to determine gene symbols (refer to ?msigdbr::msigdbr for avilable species) |
category |
Geneset category (refer to ?msigdbr::msigdbr for avilable categories) |
subcategory |
Geneset subcategory (refer to ?msigdbr::msigdbr for avilable subcategories) |
clean |
Use true to clean labels of genesets |
Value
A gsets object
Examples
HALLMARK <- msigdb_gsets("Homo sapiens", "H", "")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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