msigdb_gsets: Download data from msigdb in the form of a gsets object
In montilab/hypeR: An R Package For Geneset Enrichment Workflows
msigdb_gsets R Documentation
Download data from msigdb in the form of a gsets object
Description
Download data from msigdb in the form of a gsets object
Usage
msigdb_gsets(species, collection, subcollection = NULL, clean = FALSE)
Arguments
species
A species to determine gene symbols (refer to ?msigdbr::msigdbr_species for available species)
collection
Geneset collection (refer to ?msigdbr::msigdbr_collections for available categories)
subcollection
Geneset subcollection (refer to ?msigdbr::msigdbr_collections for available subcategories)
clean
Use true to clean labels of genesets
Value
A gsets object
Examples
HALLMARK_HUMAN <- msigdb_gsets("Homo sapiens", "H")
HALLMARK_MOUSE <- msigdb_gsets("Mus musculus", "MH")
montilab/hypeR documentation built on June 14, 2025, 3:51 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| msigdb_gsets | R Documentation |
Download data from msigdb in the form of a gsets object
Description
Download data from msigdb in the form of a gsets object
Usage
msigdb_gsets(species, collection, subcollection = NULL, clean = FALSE)
Arguments
species |
A species to determine gene symbols (refer to ?msigdbr::msigdbr_species for available species) |
collection |
Geneset collection (refer to ?msigdbr::msigdbr_collections for available categories) |
subcollection |
Geneset subcollection (refer to ?msigdbr::msigdbr_collections for available subcategories) |
clean |
Use true to clean labels of genesets |
Value
A gsets object
Examples
HALLMARK_HUMAN <- msigdb_gsets("Homo sapiens", "H")
HALLMARK_MOUSE <- msigdb_gsets("Mus musculus", "MH")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.