msigdb_download: Download data from msigdb in the form of a named list
In montilab/hypeR: An R Package For Geneset Enrichment Workflows
msigdb_download R Documentation
Download data from msigdb in the form of a named list
Description
Download data from msigdb in the form of a named list
Usage
msigdb_download(species, collection, subcollection = NULL)
Arguments
species
A species to determine gene symbols (refer to ?msigdbr::msigdbr for available species)
collection
Geneset collection (refer to ?msigdbr::msigdbr_collections for available categories)
subcollection
Geneset subcollection (refer to ?msigdbr::msigdbr_collections for available subcategories)
Value
A list of genesets
Examples
HALLMARK_HUMAN <- msigdb_download("Homo sapiens", "H")
HALLMARK_MOUSE <- msigdb_download("Mus musculus", "MH")
montilab/hypeR documentation built on June 14, 2025, 3:51 a.m.
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| msigdb_download | R Documentation |
Download data from msigdb in the form of a named list
Description
Download data from msigdb in the form of a named list
Usage
msigdb_download(species, collection, subcollection = NULL)
Arguments
species |
A species to determine gene symbols (refer to ?msigdbr::msigdbr for available species) |
collection |
Geneset collection (refer to ?msigdbr::msigdbr_collections for available categories) |
subcollection |
Geneset subcollection (refer to ?msigdbr::msigdbr_collections for available subcategories) |
Value
A list of genesets
Examples
HALLMARK_HUMAN <- msigdb_download("Homo sapiens", "H")
HALLMARK_MOUSE <- msigdb_download("Mus musculus", "MH")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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