dot-enrichment_map: Plot enrichment map
In montilab/hypeR: An R Package For Geneset Enrichment Workflows

.enrichment_map

R Documentation

Plot enrichment map

Description

Plot enrichment map

Usage

.enrichment_map(
  hyp_df,
  genesets,
  similarity_metric = c("jaccard_similarity", "overlap_similarity"),
  similarity_cutoff = 0.2,
  pval_cutoff = 1,
  fdr_cutoff = 1,
  val = c("fdr", "pval"),
  top = NULL,
  title = ""
)

Arguments

`hyp_df`	A dataframe from a hyp object
`genesets`	A list of genesets
`similarity_metric`	Metric to calculate geneset similarity
`similarity_cutoff`	Geneset similarity cutoff
`pval_cutoff`	Filter results to be less than pval cutoff
`fdr_cutoff`	Filter results to be less than fdr cutoff
`val`	Choose significance value shown above nodes e.g. c("fdr", "pval")
`top`	Limit number of pathways shown
`title`	Plot title