API for mrc-ide/mcstate
Monte Carlo Methods for State Space Models
| Global functions | |
|---|---|
| NLAYER | Source code |
| `$.mcstate_pmcmc` | Source code |
| `%||%` | Source code |
| `[.particle_filter_data` | Source code |
| `[[.mcstate_pmcmc` | Source code |
| `array_last_dimension<-` | Source code |
| `layernames<-` | Source code |
| adaptive_proposal_control | Man page Source code |
| all_or_none | Source code |
| array_bind | Man page Source code |
| array_drop | Man page Source code |
| array_first_dimension | Source code |
| array_flatten | Man page Source code |
| array_from_list | Source code |
| array_last_dimension | Source code |
| array_nth_dimension | Source code |
| array_reshape | Man page Source code |
| assert_character | Source code |
| assert_dimensions | Source code |
| assert_dimnames | Source code |
| assert_function | Source code |
| assert_function_or_null | Source code |
| assert_in_range | Source code |
| assert_integer | Source code |
| assert_is | Source code |
| assert_is_or_null | Source code |
| assert_list_of | Source code |
| assert_logical | Source code |
| assert_named | Source code |
| assert_scalar | Source code |
| assert_scalar_character | Source code |
| assert_scalar_logical | Source code |
| assert_scalar_positive_integer | Source code |
| assert_strictly_increasing | Source code |
| bind_mcstate_trajectories | Source code |
| bind_mcstate_trajectories_discrete | Source code |
| calc_proposal_vcv | Source code |
| calc_scaling_increment | Source code |
| callr_safe_result | Source code |
| check_combine | Source code |
| check_compare | Source code |
| check_n_parameters | Source code |
| check_parameters | Source code |
| check_replacement | Source code |
| check_save_restart | Source code |
| check_time_step | Source code |
| check_time_type | Source code |
| combine_adaptive | Source code |
| combine_state | Source code |
| copy_list_and_lock | Source code |
| data_frame | Source code |
| deterministic_times_restart | Source code |
| filter_check_times | Source code |
| filter_current_seed | Source code |
| filter_run | Source code |
| filter_run_multistage | Source code |
| filter_run_simple | Source code |
| format.mcstate_pmcmc | Source code |
| history_collector | Source code |
| history_multiple | Source code |
| history_single | Source code |
| if2 | Man page Source code |
| if2_control | Man page Source code |
| if2_parameter | Man page Source code |
| if2_parameters | Man page |
| if2_sample | Man page Source code |
| is_3d_array | Source code |
| is_dust_generator | Source code |
| join_histories | Source code |
| join_restart_state | Source code |
| last | Source code |
| layernames | Source code |
| list_to_numeric | Source code |
| make_rerun | Source code |
| make_seeds | Source code |
| match_value | Source code |
| mcstate_pmcmc | Source code |
| mcstate_trajectories | Source code |
| mcstate_trajectories_continuous | Source code |
| mcstate_trajectories_discrete | Source code |
| multistage_epoch | Man page Source code |
| multistage_parameters | Man page Source code |
| nested_transform | Source code |
| nlayer | Source code |
| normalise | Source code |
| particle_deterministic | Man page |
| particle_deterministic_state | Man page |
| particle_deterministic_state_support | Source code |
| particle_filter | Man page |
| particle_filter_check_multistage_pars | Source code |
| particle_filter_constant_log_likelihood | Source code |
| particle_filter_data | Man page Source code |
| particle_filter_data_split | Source code |
| particle_filter_early_exit | Source code |
| particle_filter_from_inputs | Source code |
| particle_filter_from_inputs_deterministic | Source code |
| particle_filter_from_inputs_stochastic | Source code |
| particle_filter_initial | Man page Source code |
| particle_filter_pars_multiple | Source code |
| particle_filter_set_n_threads | Source code |
| particle_filter_state | Man page |
| particle_filter_state_support | Source code |
| particle_filter_update_state | Source code |
| particle_resample | Source code |
| pds_compare_multiple | Source code |
| pds_compare_single | Source code |
| pds_index_multiple | Source code |
| pds_index_process | Source code |
| pds_index_single | Source code |
| pfs_compare_multiple | Source code |
| pfs_compare_single | Source code |
| pfs_index_multiple | Source code |
| pfs_index_single | Source code |
| pfs_initial_multiple | Source code |
| pfs_initial_single | Source code |
| pmcmc | Man page Source code |
| pmcmc_chains_cleanup | Man page Source code |
| pmcmc_chains_collect | Man page Source code |
| pmcmc_chains_path | Source code |
| pmcmc_chains_prepare | Man page Source code |
| pmcmc_chains_run | Man page Source code |
| pmcmc_check_control | Source code |
| pmcmc_check_initial | Source code |
| pmcmc_check_initial_nested | Source code |
| pmcmc_check_initial_simple | Source code |
| pmcmc_combine | Man page Source code |
| pmcmc_control | Man page Source code |
| pmcmc_filter | Source code |
| pmcmc_filter_on_generation | Source code |
| pmcmc_multiple_parallel | Source code |
| pmcmc_multiple_series | Source code |
| pmcmc_parallel_progress | Source code |
| pmcmc_parallel_progress_data | Source code |
| pmcmc_parallel_threads | Source code |
| pmcmc_parameter | Man page Source code |
| pmcmc_parameters | Man page |
| pmcmc_parameters_nested | Man page |
| pmcmc_predict | Man page Source code |
| pmcmc_progress | Source code |
| pmcmc_run_chain | Source code |
| pmcmc_sample | Man page Source code |
| pmcmc_thin | Man page Source code |
| pmcmc_varied_parameter | Man page Source code |
| ppn_validate_fix | Source code |
| ppn_validate_parameters | Source code |
| ppn_validate_parameters_fixed | Source code |
| ppn_validate_parameters_varied | Source code |
| ppn_validate_populations | Source code |
| ppn_validate_proposals | Source code |
| ppn_validate_transform | Source code |
| predict.mcstate_pmcmc | Source code |
| predict.smc2_result | Source code |
| print.mcstate_pmcmc | Source code |
| progress_percentage | Source code |
| qp | Source code |
| r6_private | Source code |
| recycle | Source code |
| reflect_proposal | Source code |
| reflect_proposal_both | Source code |
| reflect_proposal_one | Source code |
| restart_multiple | Source code |
| restart_single | Source code |
| rmvnorm_generator | Source code |
| scale_log_weights | Source code |
| set_into | Source code |
| set_layernames | Source code |
| set_names | Source code |
| smc2 | Man page Source code |
| smc2_control | Man page Source code |
| smc2_parameter | Man page Source code |
| smc2_parameters | Man page |
| smc2_state | Source code |
| squote | Source code |
| str.mcstate_pmcmc | Source code |
| str_collapse | Source code |
| test_integer | Source code |
| transform_state_identity | Source code |
| update_alternate | Source code |
| update_autocorrelation | Source code |
| update_mean | Source code |
| update_scaling | Source code |
| update_single | Source code |
| update_vcv | Source code |
| vcapply | Source code |
| viapply | Source code |
| vlapply | Source code |
| vnapply | Source code |
